PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0010ss02140.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 91aa    MW: 10088.7 Da    PI: 8.7757
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0010ss02140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000311537123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++Cg +F     L  H+r+H
  Vang0010ss02140.1 15 HQCSICGLVFGLGQALGGHMRKH 37
                       79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.35E-51238No hitNo description
PROSITE profilePS501578.6631537IPR007087Zinc finger, C2H2
PfamPF139122.0E-91538IPR007087Zinc finger, C2H2
PROSITE patternPS0002801737IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MASNLSSSMV TPRLHQCSIC GLVFGLGQAL GGHMRKHRVS SNDALSTIHD RDLPESNVIK  60
KLRLWLDLNL TPYENYLTLN SMTPVLHLFL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0010ss02140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-151AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132100.12e-36hypothetical protein PHAVU_011G066800g
TrEMBLA0A4D6LII95e-39A0A4D6LII9_VIGUN; Uncharacterized protein
STRINGXP_007132100.16e-36(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-14C2H2 family protein