PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0010ss02220.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 192aa    MW: 21543.8 Da    PI: 4.4799
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0010ss02220.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.3e-1015392348
                       -HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                       +W++Iar+++ gRt++++k++w++++
  Vang0010ss02220.2 15 RWSRIARKLP-GRTDNEIKNFWRTFM 39
                       5*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.618143IPR017930Myb domain
SuperFamilySSF466891.33E-71043IPR009057Homeodomain-like
PfamPF002499.0E-71537IPR001005SANT/Myb domain
CDDcd001678.00E-71539No hitNo description
Gene3DG3DSA:1.10.10.606.0E-111540IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
LVTSIALLTF MVPCRWSRIA RKLPGRTDNE IKNFWRTFMR KKKALEKKRA SPSSSSSSSS  60
LSSINHAVDS HASKEVGEES FYDTGGYGYD DVTGLISAGE EFSLDDIWKD IVLSEDDTIQ  120
QQPLYELQSQ EGCNFSSPPA MIYSPSSSWE YNSSHPLWVM DEEESSKMLF PASSDQYYYS  180
CYEQGNAFLT G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0010ss02220.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017411400.11e-127PREDICTED: transcription factor MYB59-like
TrEMBLA0A0S3SCV21e-127A0A0S3SCV2_PHAAN; Uncharacterized protein
STRINGXP_007132104.14e-81(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.28e-16myb domain protein 48