PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0010ss03200.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

FAR1

Protein Properties

Length: 256aa MW: 28836.3 Da PI: 5.6932

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0010ss03200.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.7	4.6e-29	91	178	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF vr+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a+++v+k ++gkw+vtkl++eH+H+l+p Vang0010ss03200.1 91 FYNAYATDVGFIVRVSKLSRSRRDGTAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMIMVRKVSSGKWVVTKLVKEHTHPLTP 178 ****************************************9988..9************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.2E-26	91	178	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MDSFVAAVEF EIDGTGETVA NAAIDEISSV ADDNREGESI EPNYKQDEGD NLAQDSSGIT 60 IPFAIPTVSV VAVEEPYVGQ EFESESAAQA FYNAYATDVG FIVRVSKLSR SRRDGTAIGR 120 ALVCNKEGFR MPDKREKIVR QRAETRVGCR AMIMVRKVSS GKWVVTKLVK EHTHPLTPGK 180 GRRDFVYEQY PNEHDKIREL SQQLACEKKR SATYKRHLEL IFEHIEEHNE SLSKKIQHIV 240 DSVREMETKE QQSQL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0010ss03200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017431505.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	A0A1S3THZ7	1e-178	A0A1S3THZ7_VIGRR; protein FAR1-RELATED SEQUENCE 7
STRING	XP_007131945.1	1e-165	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	8e-96	FAR1 family protein