PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0013ss00970.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 304aa    MW: 34052.1 Da    PI: 10.3928
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0013ss00970.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.82.9e-10197217222
                        --SS-EEEEEEE--TT-SS-E CS
               WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                        +D ++WrKYGqK++kgs++pr
  Vang0013ss00970.2 197 SDSWAWRKYGQKPIKGSPYPR 217
                        69******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF053402.1E-6648IPR008004Uncharacterised protein family UPF0503
Gene3DG3DSA:2.20.25.803.5E-9191217IPR003657WRKY domain
SuperFamilySSF1182901.44E-7194217IPR003657WRKY domain
SMARTSM007740.0025196239IPR003657WRKY domain
PROSITE profilePS5081112.553197233IPR003657WRKY domain
PfamPF031067.0E-6198217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
QQRSDCPACL CKRLVLLDPN NNNSLVTARK PPSTVAVAAL KALFRPRNPR RKRKLILDRL  60
IGACDEEIPL SSTVERRRPT AWLNSGLRQG MNGGLRQGLN DGLRRALMLG FGGEENLEAR  120
EANENRKSAR DSDMRYICIF QFLSYVDGGF AYHVALSVRG IAFVETCRRA IQKRVVQIPI  180
KETEGCRLKG ESNTPPSDSW AWRKYGQKPI KGSPYPRLIP FPKRGTTGVA ARRGARHGNK  240
WKGAAWTPQW YHADVESALL PMGEEDELLF ADLGELPECS VMFRQGLLAE RRRYTAPWCG  300
TTS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14854PRRKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0013ss00970.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150661e-110AP015066.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0022, complete sequence, cultivar: Shumari.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2405133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-20WRKY DNA-binding protein 65