PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0013ss01040.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 384aa    MW: 43404.7 Da    PI: 10.0731
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0013ss01040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.7e-151461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       ++ WT+eEd +l+ +v+++G  +W+  +r  g+ R++k+c++rw ++l
  Vang0013ss01040.1 14 KDTWTPEEDRKLIAYVTRYGFWNWRQLPRFAGLARCGKSCRLRWMNHL 61
                       679*******************************************97 PP
2Myb_DNA-binding51.32.7e-1668111247
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +++ eE+e +++ +++lG++ W++Ia++++ gRt+ ++k++wq+ 
  Vang0013ss01040.1  68 ANFSSEEEEYILRMHTKLGNR-WSAIAAELP-GRTDVEVKNHWQTT 111
                        589******************.*********.************97 PP
3Myb_DNA-binding47.25.1e-15213260148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+W+++Ed +lv +++++G  +W+  +r  g+ R++k+c++rw +yl
  Vang0013ss01040.1 213 KGAWSPDEDTKLVAYITRYGHWNWSQLPRFAGLARSGKSCRLRWMNYL 260
                        79******************99************************97 PP
4Myb_DNA-binding44.63.3e-14266310147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg++T++ +e +++ +++ G++ W++Ia++++ gRt+ ++k++w++ 
  Vang0013ss01040.1 266 RGNFTPQQEECIIRIHAERGNK-WSAIAAELP-GRTDLEVKNHWHTT 310
                        89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.464961IPR017930Myb domain
SMARTSM007172.2E-101363IPR001005SANT/Myb domain
SuperFamilySSF466893.59E-2814108IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-221668IPR009057Homeodomain-like
CDDcd001677.35E-91661No hitNo description
PfamPF139211.9E-131776No hitNo description
PROSITE profilePS5129424.02362116IPR017930Myb domain
SMARTSM007175.2E-1566114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2269115IPR009057Homeodomain-like
CDDcd001675.72E-1069112No hitNo description
Gene3DG3DSA:1.10.10.603.4E-21205263IPR009057Homeodomain-like
PROSITE profilePS5129414.904208260IPR017930Myb domain
SuperFamilySSF466891.84E-27210307IPR009057Homeodomain-like
SMARTSM007171.2E-9212262IPR001005SANT/Myb domain
PfamPF002492.6E-12213260IPR001005SANT/Myb domain
CDDcd001679.97E-8215260No hitNo description
PROSITE profilePS5129423.671261315IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-22264314IPR009057Homeodomain-like
SMARTSM007174.1E-12265313IPR001005SANT/Myb domain
PfamPF002499.5E-13266310IPR001005SANT/Myb domain
CDDcd001672.52E-7268311No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MVKTPSCDKS GPGKDTWTPE EDRKLIAYVT RYGFWNWRQL PRFAGLARCG KSCRLRWMNH  60
LRPKIKRANF SSEEEEYILR MHTKLGNRWS AIAAELPGRT DVEVKNHWQT TLKKRSQEEA  120
LAKEETRASK SSKNKESTSN GVHVPFPASS QNSNDSVDIS FSSLSSSSDE YSSGPYTESI  180
HTFAYYHNST IILQLFLTKM VRTPSSDNSG LRKGAWSPDE DTKLVAYITR YGHWNWSQLP  240
RFAGLARSGK SCRLRWMNYL RPNVKRGNFT PQQEECIIRI HAERGNKWSA IAAELPGRTD  300
LEVKNHWHTT LRKRSQEEAL AIEETRASKS SKNKESMDLV PNCNGAAVPF SATSQITNSS  360
SPLFSFSSLS SSSKEFSSGP CFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-25231420127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0013ss01040.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-162AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432875.11e-116PREDICTED: myb-related protein Myb4-like
SwissprotQ7XBH41e-47MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A4D6LGU41e-155A0A4D6LGU4_VIGUN; Myb proto-oncogene protein
STRINGGLYMA06G45547.13e-78(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-48myb domain protein 14
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]