PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0013ss01090.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 255aa    MW: 29305.7 Da    PI: 6.5809
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0013ss01090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.3e-091445132
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                       +g WT+eEd +l+ +v+ +G ++W+  ++  g
  Vang0013ss01090.1 14 KGTWTPEEDWKLISYVTTHGHKNWRQLPKFAG 45
                       799**********************9999888 PP
2Myb_DNA-binding521.7e-1688132147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg+ T eE+e+++++++ +G++ W+ I ++++ gR+++++k++w+ +
  Vang0013ss01090.1  88 RGNYTYEEEEIIIKLHQIHGNR-WSVIVSHLP-GRSDNEIKNHWHAH 132
                        899*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.762982IPR017930Myb domain
SuperFamilySSF466891.89E-2611129IPR009057Homeodomain-like
SMARTSM007171.9E-91384IPR001005SANT/Myb domain
PfamPF002496.6E-111482IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-221589IPR009057Homeodomain-like
CDDcd001678.35E-71682No hitNo description
PROSITE profilePS5129422.72383137IPR017930Myb domain
SMARTSM007179.2E-1687135IPR001005SANT/Myb domain
PfamPF002491.2E-1488132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-2590136IPR009057Homeodomain-like
CDDcd001675.03E-1190133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVRTPYCDNN GLRKGTWTPE EDWKLISYVT THGHKNWRQL PKFAGEFKNS TYLKNLNKFF  60
ISMFSGLSRC GKSCRLRWMN YLRPGIKRGN YTYEEEEIII KLHQIHGNRW SVIVSHLPGR  120
SDNEIKNHWH AHLKKRFQHN SETNEKIEAS TSKQHSLVES IQEESGEVVA SSFQNSCLAT  180
SQTPDSDSPS PQHTSLRDAL CMISELEPEA ASNGNLATDN FADFMEQNTD PISAYSWEEL  240
YEISYLCEFL APSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23121375108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0013ss01090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432008.11e-172PREDICTED: myb-related protein Myb4-like
TrEMBLA0A0L9V5U41e-171A0A0L9V5U4_PHAAN; Uncharacterized protein
STRINGXP_007132609.11e-137(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.15e-55myb domain protein 15