PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0013ss01150.1
Common NameLR48_Vigan08g123500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 236aa    MW: 27361.3 Da    PI: 6.2277
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0013ss01150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-161461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W +eEd++l+ +v+ +G ++W+  ++  g+ R++k+c++rw +yl
  Vang0013ss01150.1 14 KGAWCEEEDKKLIAYVQNHGHPNWRQLPKFAGLQRCGKSCRLRWMNYL 61
                       799*******************************************97 PP
2Myb_DNA-binding55.99.9e-1867112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg+ T+ E++++ d++k++G++ W++Ia+ ++ gRt++++k++w+++l
  Vang0013ss01150.1  67 RGNYTPKEEQIITDLHKKHGNK-WSLIAESLP-GRTDNEIKNYWHSHL 112
                        899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.356961IPR017930Myb domain
SuperFamilySSF466892.16E-2912108IPR009057Homeodomain-like
SMARTSM007176.1E-111363IPR001005SANT/Myb domain
PfamPF002492.0E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-221567IPR009057Homeodomain-like
CDDcd001671.11E-81661No hitNo description
PROSITE profilePS5129425.22662116IPR017930Myb domain
SMARTSM007171.2E-1666114IPR001005SANT/Myb domain
PfamPF002496.3E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2668114IPR009057Homeodomain-like
CDDcd001673.30E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVRAPYFDKN GTKKGAWCEE EDKKLIAYVQ NHGHPNWRQL PKFAGLQRCG KSCRLRWMNY  60
LRPNLKRGNY TPKEEQIITD LHKKHGNKWS LIAESLPGRT DNEIKNYWHS HLKKFQNSNN  120
NSSCDEDLKS NGCKEFEMEM NEGHSVESHH ILESSVSITS ETSYTDHNSP CLSFCSSHTE  180
STMNLCKEEE SVASWETLDL GFSSNFWTEP FISENALDED YFHISSYGTE PFYLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-24141144103MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0013ss01150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432827.11e-177PREDICTED: myb-related protein Myb4-like
TrEMBLA0A0L9V5Y31e-176A0A0L9V5Y3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SBN61e-176A0A0S3SBN6_PHAAN; Uncharacterized protein
STRINGGLYMA06G45520.11e-121(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-57myb domain protein 14
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]