PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0013ss01170.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 164aa    MW: 18710.1 Da    PI: 6.0112
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0013ss01170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.3e-161461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W+ eEd++l  +v+ +G  +W+  ++  g+ R++k+c++rw++yl
  Vang0013ss01170.1 14 KGAWSREEDDKLRAYVHTYGHSNWRQLPKFAGLARCGKSCRLRWLNYL 61
                       79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-22863IPR009057Homeodomain-like
PROSITE profilePS5129422.432965IPR017930Myb domain
SMARTSM007171.3E-121363IPR001005SANT/Myb domain
PfamPF002494.8E-151461IPR001005SANT/Myb domain
SuperFamilySSF466898.79E-231588IPR009057Homeodomain-like
CDDcd001672.83E-111661No hitNo description
PROSITE profilePS500904.49562106IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.3E-106495IPR009057Homeodomain-like
SMARTSM007176066107IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MVRTPFYDKN GVKKGAWSRE EDDKLRAYVH TYGHSNWRQL PKFAGLARCG KSCRLRWLNY  60
LRPNLKHGNY TPEEEEIIIR LHQQFGNSSL AISAETPEGD NYTLITGAEE DGVPPLLSYK  120
EFSGDFWSEP FLLEDTIHTF KDDICTGKGM ALLIPNFDAA YFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-131497789B-MYB
1h8a_C4e-13149727109MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0013ss01170.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-126AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523889.13e-75transcription factor MYB14-like
SwissprotQ9SJX81e-38MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A1S3W0T67e-74A0A1S3W0T6_VIGRR; transcription factor MYB14-like
STRINGXP_007132613.12e-64(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.16e-41myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]