PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0021ss00430.3

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bZIP

Protein Properties

Length: 414aa MW: 46060.2 Da PI: 9.1821

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0021ss00430.3	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.4	2e-10	140	174	4	38
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 k rr+++NReAAr+sR+RKka++++Le +L Vang0021ss00430.3 140 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKL 174 6889*************************865555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-7	137	202	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.243	139	183	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-7	140	176	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.64E-7	141	184	No hit	No description
CDD	cd14708	4.74E-21	141	191	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.5E-7	142	185	No hit	No description
PROSITE pattern	PS00036	0	144	159	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.8E-27	223	294	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
LRKVCMASHR IGELDFAFVI LAALFTARPA ATLEMFPSWP MRFQQTPRVL GGSKSGGEST 60 DSGLSSKTEP PFEAESPMSK KASSSDHQAF DQQHLQHRQQ LQQDMASDAA RTASSQNQSA 120 AKSQEKRKGT GSTSEKPLDA KTLRRLAQNR EAARKSRLRK KAYVQQLESS RLKLTQIEQE 180 LQRARSQGLF VDCGGVGSNV SSAGAAMFDM EYGRWLEEDH RLMGELRNGL QVPLSDSDMR 240 VMVDGYLSHY DEIFRLKGVA AKSDVFHLIN GMWTSQAERC FLWIGGFRPS DLITQAEEAL 300 SQGLEQLQQS LVDTIAGGPV VDGVQQMVVA MSKLANLEGF VRQADNLRQQ TLHQLCRLLT 360 VRQAARCFIV IGEYYGRLRA LSSLWASRPR ENASGPTFSE SFLEFLRDVI KIH*

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

LRKVCMASHR IGELDFAFVI LAALFTARPA ATLEMFPSWP MRFQQTPRVL GGSKSGGEST  60
DSGLSSKTEP PFEAESPMSK KASSSDHQAF DQQHLQHRQQ LQQDMASDAA RTASSQNQSA  120
AKSQEKRKGT GSTSEKPLDA KTLRRLAQNR EAARKSRLRK KAYVQQLESS RLKLTQIEQE  180
LQRARSQGLF VDCGGVGSNV SSAGAAMFDM EYGRWLEEDH RLMGELRNGL QVPLSDSDMR  240
VMVDGYLSHY DEIFRLKGVA AKSDVFHLIN GMWTSQAERC FLWIGGFRPS DLITQAEEAL  300
SQGLEQLQQS LVDTIAGGPV VDGVQQMVVA MSKLANLEGF VRQADNLRQQ TLHQLCRLLT  360
VRQAARCFIV IGEYYGRLRA LSSLWASRPR ENASGPTFSE SFLEFLRDVI KIH*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0021ss00430.3

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	1e-152	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017423025.1	0.0	PREDICTED: transcription factor TGA2-like isoform X1
Swissprot	Q93XM6	1e-152	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A0L9UNH4	0.0	A0A0L9UNH4_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SGX3	0.0	A0A0S3SGX3_PHAAN; Uncharacterized protein
STRING	XP_007150072.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-130	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]