PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0021ss00770.1
Common NameLR48_Vigan05g194200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 449aa    MW: 51023.2 Da    PI: 6.2478
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0021ss00770.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.81.1e-21116210183
           trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcp 80 
                        +Wt++ v++Li++++ ++++   g            +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++++ +++t ++++++ +
  Vang0021ss00770.1 116 KWTDNVVRLLITVVSCVGDDGTIGGmdghkrksvvlQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGTcCQVVENPA 207
                        7**************777777765444455666777**********************************************8467776666 PP

           trihelix  81 yfd 83 
                        + d
  Vang0021ss00770.1 208 LMD 210
                        655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.6E-18114239No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MNSSGLGGGF LSGPSGAILD LESSFHRHQQ TQLGHPSITG QQHLNIMGGL ESDHPIGLIE  60
VKNLNAGLNF GKGKAIAPSN SNELSEEDEP SYAEEGNCEN LDGGKSKKGS PWQRMKWTDN  120
VVRLLITVVS CVGDDGTIGG MDGHKRKSVV LQKKGKWKTV SKIMISKGCH VSPQQCEDKF  180
NDLNKRYKRL NDILGRGTCC QVVENPALMD SIPNLSTKMK DDVRKILSSK HLFYKEMCAY  240
HNGQRIPNCH ELDLQGYSME HGKDSRRENN ASEDEDEDHN DSEDDELEDE ININAHEDGG  300
RMQEQCDRNI LSEEDGHFGP QTSRMDKFEV EMARVFQDPG KSLREQREWI KIQMLQFQEQ  360
NISYQAQALE LEKQRLKWLR YCSKKDRELE RLRLENKRMK LENERRILKL KQKELETDFS  420
TSEMSLDPAS IGINRPQGRE HISLGRQQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0021ss00770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017425323.10.0PREDICTED: uncharacterized protein LOC108334157 isoform X1
RefseqXP_017425324.10.0PREDICTED: uncharacterized protein LOC108334157 isoform X1
RefseqXP_017425325.10.0PREDICTED: uncharacterized protein LOC108334157 isoform X1
TrEMBLA0A0L9UP150.0A0A0L9UP15_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SG520.0A0A0S3SG52_PHAAN; Uncharacterized protein
STRINGXP_007150380.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.14e-81sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]