PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0021ss01470.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 178aa MW: 19843 Da PI: 9.2916

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0021ss01470.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.0005	45	67	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+++Fs+ L H +H Vang0021ss01470.1 45 FKCKTCNRRFSSFQALGGHRASH 67 89**********99999998887 PP
2	zf-C2H2	10.9	0.0015	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F L H+r+H Vang0021ss01470.1 96 HPCPICGLQFAIGQALGGHMRKH 118 78*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.367	45	72	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.34E-7	45	118	No hit	No description
SMART	SM00355	0.086	45	67	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	7.2E-12	45	69	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	47	67	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.23	96	118	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.2E-8	96	119	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	98	118	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MKRDREEGEL DNMANCLMLL TKVGESEANA TSKGRDIRDG EIGDFKCKTC NRRFSSFQAL 60 GGHRASHKKP KLMITDLSCR HQLPCTPTTK QQPRMHPCPI CGLQFAIGQA LGGHMRKHRT 120 AINDGLLNNR RDSDSLSILK KSKNGGRLNL CLDLNLMPLE DDDLKLNLRT PVLNCFI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0021ss01470.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017424444.1	1e-127	PREDICTED: zinc finger protein ZAT12
TrEMBL	A0A0S3SGA1	1e-126	A0A0S3SGA1_PHAAN; Uncharacterized protein
STRING	XP_007150296.1	1e-104	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF316	34	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53600.1	5e-29	C2H2 family protein