PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0021ss02320.1

Common Name

LR48_Vigan05g176900

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TCP

Protein Properties

Length: 142aa MW: 15692.9 Da PI: 10.4675

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0021ss02320.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	101.8	1.2e-31	13	78	8	73
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 + ++h kv+gRdRRvRlsa caar+F+L++eLG ++d++tieWLl +a+pai ++tgt+ ++ + Vang0021ss02320.1 13 KGDRHIKVNGRDRRVRLSAICAARIFQLTRELGKKTDGETIEWLLHKAEPAIVAATGTGIVPSIMS 78 579*******************************************************77776222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	24.392	13	67	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	7.8E-27	13	84	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MVRNKRRSSR GMKGDRHIKV NGRDRRVRLS AICAARIFQL TRELGKKTDG ETIEWLLHKA 60 EPAIVAATGT GIVPSIMSSV DSNATFMANT TTTNLVPLDT ITAQDSNLVT VAAVARTEQP 120 IPPFHFDFEW MQHSDLGFRD N*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0021ss02320.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017423710.1	1e-102	PREDICTED: transcription factor TCP23-like
Swissprot	O64647	6e-29	TCP9_ARATH; Transcription factor TCP9
TrEMBL	A0A0L9UNQ0	1e-101	A0A0L9UNQ0_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SGP1	1e-101	A0A0S3SGP1_PHAAN; Uncharacterized protein
STRING	XP_007150170.1	3e-79	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-30	TCP family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]