PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0021ss02410.1
Common NameLR48_Vigan05g175900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 282aa    MW: 31797.6 Da    PI: 8.1325
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0021ss02410.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       rg+W++eEd +l+d+++++G+g +W + +++ g++R++k+c++rw++yl
  Vang0021ss02410.1 14 RGPWSPEEDSKLKDYIEKHGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                       89*********************************************97 PP
2Myb_DNA-binding39.61.2e-1269111246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g ++ eEd ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
  Vang0021ss02410.1  69 GEFSDEEDRIICSLYANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                        789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.711962IPR017930Myb domain
SuperFamilySSF466891.47E-2711109IPR009057Homeodomain-like
SMARTSM007171.5E-121364IPR001005SANT/Myb domain
PfamPF002493.8E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-251569IPR009057Homeodomain-like
CDDcd001676.11E-101662No hitNo description
PROSITE profilePS5129422.46563117IPR017930Myb domain
SMARTSM007176.6E-1267115IPR001005SANT/Myb domain
PfamPF002492.4E-1169111IPR001005SANT/Myb domain
CDDcd001671.65E-870113No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDSKLKDYIE KHGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIIC SLYANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKRKLMGL  120
VPASHQRIAP YQHSSSQNPP SPFSSQTSIY RDYCNNSPYY IPAPTSSFPS LQQISVPSSN  180
YTNTTSSLPF YQNQEPLVGV SPMQYYPTTD SSMLVFGSET SCSSSDGSCS QVSLCREIKQ  240
EEMGFQNLML ADQHMNKLML SQGNVNHDGG EEYVNQWTEK PN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0021ss02410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017423707.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A0L9UNN90.0A0A0L9UNN9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SGL50.0A0A0S3SGL5_PHAAN; Uncharacterized protein
STRINGXP_007150152.11e-173(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-78myb domain protein 36
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]