PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0022ss02660.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 207aa    MW: 22970.4 Da    PI: 8.9727
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0022ss02660.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26070.82.9e-221966148
             DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48
                       +CaaCk+lrr+C++dCv+apyfpa++p+kf  vhk+FGasnv k+l++
  Vang0022ss02660.1 19 PCAACKLLRRRCTRDCVFAPYFPADEPQKFGSVHKVFGASNVNKMLQD 66
                       7*********************************************97 PP
2DUF26052.21.7e-168913653100
             DUF260  53 eredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                        +++da+ss+vyeA+ar+rdPvyG+vg i++lqqq+++l+++lal+++e
  Vang0022ss02660.1  89 KKSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDELQTQLALAQAE 136
                        6899***************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.72518137IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-3619134IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
LFSHKNMKEN GRKLGTMSPC AACKLLRRRC TRDCVFAPYF PADEPQKFGS VHKVFGASNV  60
NKMLQDYLLL ALILAYKPIS GLPFSVVVKK SDAVSSMVYE ANARVRDPVY GCVGAISSLQ  120
QQVDELQTQL ALAQAEVVHM RMSQFSPPSS DQHHHRQASL MPHEPSNSSS ENMFQSSRVL  180
SSQSKSFFGM DMVVDQTIMG QSLWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-40151467120LOB family transfactor Ramosa2.1
5ly0_B2e-40151467120LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0022ss02660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017424349.11e-125PREDICTED: LOB domain-containing protein 4
SwissprotQ9SHE91e-56LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A0S3SK411e-123A0A0S3SK41_PHAAN; Uncharacterized protein
STRINGXP_007149195.11e-108(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133434105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.17e-50LOB domain-containing protein 4