PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0022ss03100.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 257aa    MW: 28806.2 Da    PI: 9.8143
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0022ss03100.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.69e-1365128256
                        T--SS--HHHHHHHHHHHHHSSS--.........HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFeknryps.........aeereeLAkklgLterqVkvWFqNrRakek 56 
                        rk+ +++keq   Lee F+++++++         ++++  LAk+l+L  rqV vWFqNrRa+ k
  Vang0022ss03100.1  65 RKKLRLSKEQSAFLEESFKEHNTLNpcwtrnlamQKQKLALAKQLNLRPRQVEVWFQNRRARTK 128
                        788899*************87776622333332346777889999*****************98 PP
2HD-ZIP_I/II113.81.1e-3665164192
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLep.........erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                        +kk+rlskeq+++LEesF+e+++L+p         ++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke
  Vang0022ss03100.1  65 RKKLRLSKEQSAFLEESFKEHNTLNPcwtrnlamqKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKE 156
                        69**********************9866666666679999**************************************************** PP

        HD-ZIP_I/II  84 veeLreelk 92 
                         +eLr +lk
  Vang0022ss03100.1 157 LQELR-ALK 164
                        ****9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.4E-1548124IPR009057Homeodomain-like
SuperFamilySSF466891.15E-1351131IPR009057Homeodomain-like
PROSITE profilePS5007115.04661130IPR001356Homeobox domain
SMARTSM003891.1E-863134IPR001356Homeobox domain
CDDcd000862.01E-1265131No hitNo description
PfamPF000463.1E-1065128IPR001356Homeobox domain
PROSITE patternPS000270105128IPR017970Homeobox, conserved site
SMARTSM003401.6E-25130173IPR003106Leucine zipper, homeobox-associated
PfamPF021833.6E-11130164IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MELGLSLGDS SRPLLGFMEK PREASNQLGG GSFYKRNYEG EAYDQRASSR ASDEDDNNGS  60
GGNARKKLRL SKEQSAFLEE SFKEHNTLNP CWTRNLAMQK QKLALAKQLN LRPRQVEVWF  120
QNRRARTKLK QTEVDCEYLK RCCETLTEEN RRLHKELQEL RALKSSNPFY MQLPATTLTM  180
CPSCERVATN STSTSSSQSA PNATINANSG AMTIVKSTAT NNDSPSKAIG FPFSKPRFHP  240
FVHTTQQPHQ HQSPSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122130RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0022ss03100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017424144.11e-148PREDICTED: homeobox-leucine zipper protein HOX11-like
SwissprotA2YW032e-76HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
SwissprotQ6YPD01e-76HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
TrEMBLA0A0L9UJ931e-166A0A0L9UJ93_PHAAN; Uncharacterized protein
STRINGXP_007149086.11e-142(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23353382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-65homeobox from Arabidopsis thaliana