PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0022ss03590.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 444aa    MW: 48170.9 Da    PI: 7.1272
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0022ss03590.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH352.4e-11142168127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++ C++f++t  Ck+G++CkF+H++
  Vang0022ss03590.1 142 PGEPDCPYFLKTQRCKFGSKCKFNHPK 168
                        5789*********************96 PP
2zf-CCCH41.32.5e-13186210327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C+f+++tG Ck+G++CkF+H++
  Vang0022ss03590.1 186 EPPCSFYMKTGKCKFGASCKFHHPK 210
                        79*********************96 PP
3zf-CCCH40.54.5e-13261284326
                        S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                        ++ C+f+++tG CkyG++C+++H+
  Vang0022ss03590.1 261 EVDCPFYMKTGSCKYGATCRYNHP 284
                        689********************9 PP
4zf-CCCH391.4e-12347370326
                        S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                        + +C+f+++tG Ck+G+rCk++H+
  Vang0022ss03590.1 347 QIECDFYMKTGDCKFGERCKYHHP 370
                        568********************8 PP
5zf-CCCH40.83.6e-13398421427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        ++C+++++tGtCk+G++CkF H+p
  Vang0022ss03590.1 398 VICPYYLKTGTCKFGATCKFDHPP 421
                        68********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.3E-6141168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187141169IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-9143168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-5146167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4147166IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-7183210IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.521183211IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10186210IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6187211IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-6188209IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-7258285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.671258286IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-10261284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5262285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4264283IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-6344371IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094344372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6347372IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-10348370IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4350370IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-8394421IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286394422IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10398421IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-6398421IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-6399419IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MENHIYSSYS PSTNYRFRDS DSSTMFLSHH HRAADSAALR FSSSLADDIA PPGVTSRIAS  60
SAAANYLSPW ASSAATSSLD FKRSSDVLET HVFLFQFSSK ISSDSGCQHR VSYGYDFGIS  120
IDDADWWLVP NVVTSETPPE RPGEPDCPYF LKTQRCKFGS KCKFNHPKVS SENDDVSSGL  180
PERPSEPPCS FYMKTGKCKF GASCKFHHPK DIQIQSSDEL SHTQTEINSM IGGSLGDTQP  240
IKSLISPSLQ NSKGLPVRLG EVDCPFYMKT GSCKYGATCR YNHPDRNAIN PPIAGLGASI  300
LPSSAASLNI GLLSPAVSVY QAFDPRLSNP MSQVGIAESI YPQRPGQIEC DFYMKTGDCK  360
FGERCKYHHP IDRSAPSLSK QASVKLTPAG LPRREGAVIC PYYLKTGTCK FGATCKFDHP  420
PPGEVVEMAK SQGTSADGGE AED*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0022ss03590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-142AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017433251.10.0PREDICTED: zinc finger CCCH domain-containing protein 37
SwissprotQ941Q31e-128C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A0L9V4130.0A0A0L9V413_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SAA10.0A0A0S3SAA1_PHAAN; Uncharacterized protein
STRINGXP_007133464.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-130floral homeotic protein (HUA1)