PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0022ss03740.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WOX
Protein Properties Length: 158aa    MW: 18790.6 Da    PI: 10.5559
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0022ss03740.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox413.3e-131576157
                       TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       + kR+++tkeq+  L++lF    r+p++e+   +A+kl    ++ e  V+ WFqN  +++++
  Vang0022ss03740.1 15 KYKRWSPTKEQVALLKALFVHgIRNPNREQANXIAEKLrvygEVREFSVQHWFQNYGYRYRQ 76
                       579****************988*********************************8665554 PP
2Wus_type_Homeobox67.72.1e-221678365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        +RW+Pt+eQ+ +L++l+ +G+r+Pn+e+ + i+++L+ yG++++  V +WFQN   R rqk+
  Vang0022ss03740.1 16 YKRWSPTKEQVALLKALFVHGIRNPNREQANXIAEKLRVYGEVREFSVQHWFQNYGYRYRQKR 78
                       68****************************************************999998884 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.34E-10780IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-7982IPR009057Homeodomain-like
PROSITE profilePS5007111.8071277IPR001356Homeobox domain
SMARTSM003895.8E-41483IPR001356Homeobox domain
PfamPF000467.7E-111576IPR001356Homeobox domain
CDDcd000864.66E-41569No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MDQNLPNQQV QDKKKYKRWS PTKEQVALLK ALFVHGIRNP NREQANXIAE KLRVYGEVRE  60
FSVQHWFQNY GYRYRQKRRK RSTTTISYSP IPLLLDGKKK IYFFFICIII FFFFCILTFL  120
IFFCCFCFFF RSIKNIAASA RSSDTRSLSD PTCSRQS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0022ss03740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017409897.12e-36PREDICTED: WUSCHEL-related homeobox 7-like
RefseqXP_017420310.12e-36PREDICTED: WUSCHEL-related homeobox 4-like
TrEMBLA0A0S3TET22e-57A0A0S3TET2_PHAAN; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.12e-12WUSCHEL related homeobox 2