PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0022ss03970.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 846aa    MW: 95107.8 Da    PI: 6.6753
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0022ss03970.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS346.25.6e-106144012344
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        ++lL++cA++v+sg+ ++a+  L+ +s+++spdg+++qR+++yf eAL +r+ ++ +++yk+++ps+ts   ss+ + a k+f+e++P+lkf
  Vang0022ss03970.1  14 ISLLIDCAKCVASGSIKNADIGLEYISQISSPDGNAVQRMVSYFSEALGHRIIKHLPGVYKSISPSKTS--LSSDDILAEKYFYELCPFLKF 103
                        579************************************************************999998..79******************* PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                        s+l++NqaI+ea+e e  vHiiD+   +++QW+ Ll ++ +R++gpp+l+iTg+++    ske l +++   ++ A + + p++f + v+++
  Vang0022ss03970.1 104 SYLITNQAIVEAMECEMVVHIIDLHCCEPAQWIDLLLTFKNRRGGPPHLKITGINE----SKEVLDQVNFHVTSEAGKYDFPLQFYP-VVSK 190
                        ********************************************************....***************************.799* PP

               GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrll........................................................desvsle 221
                        led+++e+L+vk+g+a+a+ +vlqlh ll                                                          s +  
  Vang0022ss03970.1 191 LEDVDFEKLSVKTGDAVAITSVLQLHLLLstdddmagrispavaasmnlqrtvhmgqrtfaewlerdminayilspdsalsplsfGASPK-- 280
                        ****************************************************************************99988755544444.. PP

               GRAS 222 serdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle 313
                            ++Lk++++l+Pk+vvv+eqe+++n+++++er+ +al++ysalfd+l++++ r+s er+k+Er l+g++i+n++aceg er+erhe+le
  Vang0022ss03970.1 281 --MGNLLKAMRKLNPKLVVVTEQESNLNGSNLMERVDRALYFYSALFDCLDSTVMRTSVERQKLERTLFGEQIKNIIACEGVERKERHEKLE 370
                        ..555*************************************************************************************** PP

               GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkv 344
                        kW +rle+aGF +vpls++   +ak ll+++
  Vang0022ss03970.1 371 KWIRRLEMAGFVKVPLSYNGRIEAKNLLQRY 401
                        *****************************97 PP
2GRAS322.11.1e-984338363374
               GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        + L +cA++++sg+  +a++ L  + ++asp+gd+mqR+a+y+ e+La +++++ +++ ka++ s+t   ++see  + k+f+++ P+lk +
  Vang0022ss03970.1 433 RILNACAKFIESGSIMNADTGLDYIAHIASPYGDAMQRVATYVSEGLAFQVLKNLQGVPKAVNLSKTM--STSEEQLVKKTFYDLYPFLKTA 522
                        7899**********************************************************999987..577888899************* PP

               GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                        ++++ +aI eavegee +H+iD+ +s  +QW+ L++ L +  ++p  l+iTg+++    +ke le++  +L+  A++l+ ++efn+ ++++l
  Vang0022ss03970.1 523 YVITSHAIAEAVEGEEVIHVIDLCASDAAQWIYLMHRLKESLKSPSLLKITGIHE----KKEILEQVDTQLRAEAKSLNFKLEFNA-IVSTL 609
                        *******************************************************....9**************************.79*** PP

               GRAS 187 edleleeLrvkpgEalaVnlvlqlhrll.............................................desvsleserdevLklvks 233
                        e+++leeL v++gE la+++vlqlh+ll                                             + s++      ++Lk +++
  Vang0022ss03970.1 610 ENVDLEELPVQKGEPLAISSVLQLHTLLatddavvcnrsskeepmhqrtfaemlgkqktnlssessllqlslcATSTK----MMDFLKGLWK 697
                        ********************************************************************6555444444....556******* PP

               GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                        l+P+v+vv+eqe++  ++s+ er+ +al++y alf++le++++++  +r+ +Er llg+ei+n+va eg er+erhe+le+W  +le+aGF+
  Vang0022ss03970.1 698 LQPRVMVVTEQESSG-NGSLTERVDKALDFYGALFNCLESTVSTTLVQRNIMERTLLGQEIKNIVAGEGVERKERHEKLETWIPKLEMAGFG 788
                        ************987.578************************************************************************* PP

               GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        + ++s++  +qa+  l+ ++ +gyr+  +++sl+ +W+d+pL+svSaW+
  Vang0022ss03970.1 789 KRHISNHGIMQARKQLHGYG-NGYRLCPDNNSLFVCWNDKPLFSVSAWT 836
                        ********************.9**************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.3991411IPR005202Transcription factor GRAS
PfamPF035141.9E-10314401IPR005202Transcription factor GRAS
PROSITE profilePS5098543.724405817IPR005202Transcription factor GRAS
PfamPF035143.9E-96433836IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
LRELRLESQG LNPISLLIDC AKCVASGSIK NADIGLEYIS QISSPDGNAV QRMVSYFSEA  60
LGHRIIKHLP GVYKSISPSK TSLSSDDILA EKYFYELCPF LKFSYLITNQ AIVEAMECEM  120
VVHIIDLHCC EPAQWIDLLL TFKNRRGGPP HLKITGINES KEVLDQVNFH VTSEAGKYDF  180
PLQFYPVVSK LEDVDFEKLS VKTGDAVAIT SVLQLHLLLS TDDDMAGRIS PAVAASMNLQ  240
RTVHMGQRTF AEWLERDMIN AYILSPDSAL SPLSFGASPK MGNLLKAMRK LNPKLVVVTE  300
QESNLNGSNL MERVDRALYF YSALFDCLDS TVMRTSVERQ KLERTLFGEQ IKNIIACEGV  360
ERKERHEKLE KWIRRLEMAG FVKVPLSYNG RIEAKNLLQR YIVLIKLSLN VLDSPYPWLK  420
DMNGEDRDKY LARILNACAK FIESGSIMNA DTGLDYIAHI ASPYGDAMQR VATYVSEGLA  480
FQVLKNLQGV PKAVNLSKTM STSEEQLVKK TFYDLYPFLK TAYVITSHAI AEAVEGEEVI  540
HVIDLCASDA AQWIYLMHRL KESLKSPSLL KITGIHEKKE ILEQVDTQLR AEAKSLNFKL  600
EFNAIVSTLE NVDLEELPVQ KGEPLAISSV LQLHTLLATD DAVVCNRSSK EEPMHQRTFA  660
EMLGKQKTNL SSESSLLQLS LCATSTKMMD FLKGLWKLQP RVMVVTEQES SGNGSLTERV  720
DKALDFYGAL FNCLESTVST TLVQRNIMER TLLGQEIKNI VAGEGVERKE RHEKLETWIP  780
KLEMAGFGKR HISNHGIMQA RKQLHGYGNG YRLCPDNNSL FVCWNDKPLF SVSAWTVQKM  840
NNMVM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-4618367379Protein SCARECROW
5b3h_A5e-462083625378Protein SCARECROW
5b3h_D5e-462083625378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0022ss03970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017423389.10.0PREDICTED: scarecrow-like protein 3
TrEMBLA0A4D6M4X70.0A0A4D6M4X7_VIGUN; DELLA protein
STRINGXP_007149008.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145191017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-125scarecrow-like 3