PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0022ss04690.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

SRS

Protein Properties

Length: 210aa MW: 22244.4 Da PI: 9.034

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0022ss04690.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	83.5	5.4e-26	56	102	11	57
DUF702 11 CGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqla 57 CGn+akkdC ++RCRtCCk rg+dC+thvkstWvp+ +rrer a Vang0022ss04690.1 56 CGNRAKKDCIFRRCRTCCKGRGYDCSTHVKSTWVPSIRRREREMVVA 102 ******************************************76554 PP
2	DUF702	68.3	2.6e-21	115	166	102	153
DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++slP +v+++avf+c rvs++ +ge+e+aY ++v+i+GhvfkG+Lyd+G++ Vang0022ss04690.1 115 KQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHGVD 166 467***********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	7.8E-23	56	99	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	7.1E-24	56	94	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	3.1E-20	114	166	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	4.1E-24	118	165	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MSMLGLRDLV LIAQTPSLHQ GQPISENQTP NLPLPSSAAL SVGFGIFPLL TATPYCGNRA 60 KKDCIFRRCR TCCKGRGYDC STHVKSTWVP SIRRREREMV VAPAGGVGGG NASFKQSLPG 120 HVRAPAVFKC HRVSAIGNGE DEFAYLATVH ISGHVFKGFL YDHGVDGKIA NAVPCVSELQ 180 LGNNCSGKTR ECSSAIGLPN NNAYPASAT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0022ss04690.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	1e-166	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027343077.1	2e-98	protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	3e-37	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A371E4K6	1e-101	A0A371E4K6_MUCPR; Protein LATERAL ROOT PRIMORDIUM 1 (Fragment)
STRING	XP_007148931.1	5e-90	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5704	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54430.1	4e-40	SHI-related sequence 6

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]