PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0026ss00110.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 184aa    MW: 21322.4 Da    PI: 9.2697
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0026ss00110.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.17.1e-21233334
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdae 34
                       ien +nrqvt+skRrngi+KKA+ELSvLCda+
  Vang0026ss00110.1  2 IENPTNRQVTYSKRRNGIFKKAHELSVLCDAK 33
                       9*****************************97 PP
2K-box59.81.1e-203212014100
              K-box  14 aeslqqelakLkkeienLqreqRhllGe..dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                        a+++ ++l+kLk+ +++L+r++Rh++Ge  dL++Ls+++L+ Le+++ +s+ kiR++K +++++ +++ +kk k+l++ n +L  +l+e
  Vang0026ss00110.1  32 AKKMLENLKKLKDINNKLRRQIRHRIGEglDLDELSFQQLRTLEEDMVSSIGKIRERKFHVIKTRTDTCRKKVKSLEQMNGNLLLELKE 120
                        58899**********************9445789************************************************9888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.853136IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-11148IPR002100Transcription factor, MADS-box
PfamPF003191.6E-17233IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-16233IPR002100Transcription factor, MADS-box
PfamPF014867.3E-1832117IPR002487Transcription factor, K-box
PROSITE profilePS5129713.61732124IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
LIENPTNRQV TYSKRRNGIF KKAHELSVLC DAKKMLENLK KLKDINNKLR RQIRHRIGEG  60
LDLDELSFQQ LRTLEEDMVS SIGKIRERKF HVIKTRTDTC RKKVKSLEQM NGNLLLELKE  120
KCVIHPQFLL HDEGDEESAV ALANGASTLY AFCQHHTHLN LPSHHQHHHH GEEPFKTDDL  180
RLA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0026ss00110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7704011e-145AY770401.1 Lotus corniculatus var. japonicus MADS box protein AP3-like mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157954.11e-120hypothetical protein PHAVU_002G112200g
SwissprotQ003J23e-60TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLV7CKR21e-119V7CKR2_PHAVU; Uncharacterized protein
STRINGXP_007157954.11e-120(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.17e-25MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]