PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0026ss00220.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family DBB
Protein Properties Length: 230aa    MW: 25627.4 Da    PI: 7.8531
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0026ss00220.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.62.1e-074777434
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                       + C+ +e+  ++ fC  ++  lC+ C ++ H
  Vang0026ss00220.2 47 TLCDACESAAAIVFCAADEAALCRACDEKVH 77
                       57**************************998 PP
2zf-B_box30.48.2e-1096135237
           zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 
                        + ++C+ +e+ ++ ++Ce++++ lC +C +  H g    H
  Vang0026ss00220.2  96 DVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGgkrtH 135
                        5799**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.6E-104491IPR000315B-box-type zinc finger
PROSITE profilePS5011910.214491IPR000315B-box-type zinc finger
PfamPF006431.1E-54785IPR000315B-box-type zinc finger
CDDcd000219.86E-74789No hitNo description
SuperFamilySSF578451.35E-592130No hitNo description
PROSITE profilePS501199.15895140IPR000315B-box-type zinc finger
SMARTSM003362.1E-1195140IPR000315B-box-type zinc finger
PfamPF006431.3E-796129IPR000315B-box-type zinc finger
CDDcd000211.52E-798128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MALVVVAEKE GEVRQRLGRM KETRNMGRMW VPCQIINWWW ESPTMRTLCD ACESAAAIVF  60
CAADEAALCR ACDEKVHMCN KLASRHVRVG LASPSDVPRC DICENAPAFF YCETDGSSLC  120
LQCDMIVHVG GKRTHGRYLL FRQRVEFPGD KSSHAENPGS QPLEPGESKR GQNQLPKLKM  180
GEKQHNHVMP LLPTPGSAAD GHTKMETKMI DLNMKPNNRL HEQASNNQP*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0026ss00220.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0954480.0BT095448.1 Soybean clone JCVI-FLGm-19K10 unknown mRNA.
GenBankBT0987720.0BT098772.1 Soybean clone JCVI-FLGm-12P20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017427535.11e-137PREDICTED: B-box zinc finger protein 18-like
SwissprotC0SVM53e-71BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A4D6LRG11e-154A0A4D6LRG1_VIGUN; Zinc finger protein CONSTANS
STRINGXP_007157945.11e-129(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-73DBB family protein