PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0027ss00260.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 218aa    MW: 24279 Da    PI: 6.0262
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0027ss00260.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-1751102155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+++GV +++ +grW+A+I   +   g +k+ +lg++gt+eeAa a++ a+ +++g
  Vang0027ss00260.1  51 SKFRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTEEEAAVAYDMAAIEYRG 102
                        79****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-1251102IPR001471AP2/ERF domain
CDDcd000183.55E-2451112No hitNo description
SuperFamilySSF541715.75E-1851112IPR016177DNA-binding domain
PROSITE profilePS5103217.93852110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-1752111IPR001471AP2/ERF domain
SMARTSM003807.4E-2552116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
LAALKYWGPE TVLNFPLSNY EQQLKEMEDQ SKEEYIGSLR RKSSGFSRGV SKFRGVARHH  60
HNGRWEARIG RVFGNKYLYL GTYGTEEEAA VAYDMAAIEY RGLNAVTNFD LSRYMKWLRP  120
KDQSQPRLQA HDDSPSPTPS GPESRNATST LGPPPPPPPS SPSTSNLPPR PPRTFPEDIQ  180
TLFETQDSAG IYTDTDDIIF GDLTSIASPI FHCDLNA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0027ss00260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017424564.11e-160PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN47e-74AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0S3SF041e-159A0A0S3SF04_PHAAN; Uncharacterized protein
STRINGXP_007150824.11e-109(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.25e-72ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]