PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0027ss00480.1

Common Name

LR48_Vigan05g224100

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 248aa MW: 27663 Da PI: 7.8443

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0027ss00480.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.00019	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Vang0027ss00480.1 87 FSCNYCQRKFYSSQALGGHQNAH 109 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.64E-6	84	114	No hit	No description
PROSITE profile	PS50157	11.427	87	114	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	89	109	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MELVWSGPHP SSENDLKSPF SENPPPCSKP VLASMDIQKE KKEDQEHPYE SKPELNLINC 60 IDTNLSMNSS ESCHGGGHGD ELEPRIFSCN YCQRKFYSSQ ALGGHQNAHK RERTLAKRGH 120 RAGAAAPTDF AHRYSSMASL PLHGSYNRSL GIQAHSMINK RCFQTQTPCF GLSHCHAQNW 180 WQKQPLYSQE QATGAESESP LAGGIQRLGK FSPRLVPEGF GGYWLDSVHH LKTKQEELHK 240 LDLSLKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0027ss00480.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017423768.1	0.0	PREDICTED: zinc finger protein 1-like
TrEMBL	A0A0L9UPI9	0.0	A0A0L9UPI9_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SF62	0.0	A0A0S3SF62_PHAAN; Uncharacterized protein
STRING	XP_007150786.1	1e-140	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1439	31	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	1e-36	C2H2 family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]