PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0032ss00720.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 363aa    MW: 41123.8 Da    PI: 5.9467
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0032ss00720.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.87.7e-151563149
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       k+ien++   +tf+kR+  i KKA+ELS+LC+a+v +++  s+g+ + y
  Vang0032ss00720.1 15 KKIENNRDLLITFTKRKRDIHKKASELSTLCGAKVDILMHTSSGNWFSY 63
                       689***************************************9987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-14766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.769767IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-17874IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-12929IPR002100Transcription factor, MADS-box
PfamPF003192.1E-141663IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-122944IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-124465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEGKLIKQKQ KREIKKIENN RDLLITFTKR KRDIHKKASE LSTLCGAKVD ILMHTSSGNW  60
FSYGEPSHQA MIVSTDKQNL SKDVINLVED QTKLEIDELC AKNKRLIDQM HYEEEREKEL  120
TEIMKTRNAH GWWEAKDLNH EQAKEMRASL MELKQKLENE LSIKCGEKHK SSHAPPNQVN  180
GFNFCPNYTR GSSISEVVFG ANNEAYGIVA TESILPDISF SPMDEGKDFK FFPYGERRED  240
LFDIVYPHKY LYHGYSFFVD DSASTFASFP AKQVQGLNPN DGNGSTGSTH IFSSSSNQSQ  300
GNNSFVPNAN NETIKIRGNE NGGGNDSCAL LSSSHLNQQQ ETNLFMDIEN ELRDDFSFPP  360
FP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0032ss00720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020232939.11e-117agamous-like MADS-box protein AGL23
TrEMBLA0A0L9T5U10.0A0A0L9T5U1_PHAAN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1822966
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28450.14e-17AGAMOUS-like 58