 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Vang0032ss01440.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
C2H2 |
| Protein Properties |
Length: 239aa MW: 25711.1 Da PI: 8.4443 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vang0032ss01440.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.3 | 0.00024 | 213 | 235 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
+C+ C++ F + + L++H + H
Vang0032ss01440.1 213 SCGSCKRNFANEDGLQQHKKAkH 235
7*****************99877 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0009651 | Biological Process | response to salt stress |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 239 aa
Download sequence Send
to blast |
LQMDSPMEFW GVEVKVGQNV KVDPMDPVSA YIHISQVALG EAKKEKANEP VVVYLKVGDQ 60
KIVLGTLKKD DIPHLSLDLV LDSDSELSHS SKSASVFFCG YKVLTDDGNI SDFSGEDQLY 120
LLDSEEEEEA LPLKGQDNGK PVTKAEGAKG KKRQNESASK TPISSKKAKT ATPEKTDGKK 180
SVHVATPYPM KKGGKTPKNV TKVQSPTSAG QLSCGSCKRN FANEDGLQQH KKAKHGGQ*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015039 | 1e-158 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
