PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0032ss01930.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

G2-like

Protein Properties

Length: 390aa MW: 43342.9 Da PI: 7.9182

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0032ss01930.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.3	1.7e-33	42	96	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LH+rF+eav+qLGG++kAtPkt+++lm++ gLtl+h+kSHLQkYRl Vang0032ss01930.1 42 KPRLKWTPDLHARFIEAVQQLGGADKATPKTVMKLMGISGLTLYHLKSHLQKYRL 96 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.508	39	99	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.7E-31	40	97	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.27E-16	41	97	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-23	42	97	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-9	44	95	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-22	146	192	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
LQHQGKNIHS SSRMPIPSER HMFLHTGNGS GDSSLVLSTD AKPRLKWTPD LHARFIEAVQ 60 QLGGADKATP KTVMKLMGIS GLTLYHLKSH LQKYRLSKSL HGQSNNVTHK ISINPGAATD 120 ERLRENNGTH VNNLNLAPQS NNKDLHISEA LQMQIEVQRR LNEQLEVQRL LQLRIEAQGK 180 YLQAVLEKAQ ETLGRQNLGV VGLEAAKLQL SDLVSKVSSQ CLNSAFLELK ELQGFSPHQT 240 QTNQPNDCSM DSCLTSCEVS QKEQEIQNGG MSLRPFNVHT FMERKELIEG PNLNNLPSTD 300 LKWCDPVKNT FLTPLSRRSP SNLSMSIGLE GETENGSTIR KESVKSVAEK VSQDYGLPSY 360 FAAPNLDLTT EDKNNRSCKE LDLNGFSWN*

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

LQHQGKNIHS SSRMPIPSER HMFLHTGNGS GDSSLVLSTD AKPRLKWTPD LHARFIEAVQ  60
QLGGADKATP KTVMKLMGIS GLTLYHLKSH LQKYRLSKSL HGQSNNVTHK ISINPGAATD  120
ERLRENNGTH VNNLNLAPQS NNKDLHISEA LQMQIEVQRR LNEQLEVQRL LQLRIEAQGK  180
YLQAVLEKAQ ETLGRQNLGV VGLEAAKLQL SDLVSKVSSQ CLNSAFLELK ELQGFSPHQT  240
QTNQPNDCSM DSCLTSCEVS QKEQEIQNGG MSLRPFNVHT FMERKELIEG PNLNNLPSTD  300
LKWCDPVKNT FLTPLSRRSP SNLSMSIGLE GETENGSTIR KESVKSVAEK VSQDYGLPSY  360
FAAPNLDLTT EDKNNRSCKE LDLNGFSWN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-20	41	98	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-20	41	98	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-20	41	98	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-20	41	98	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-20	41	98	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-20	41	98	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-20	41	98	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-20	41	98	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0032ss01930.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027909406.1	0.0	myb-related protein 2-like
Swissprot	Q9SQQ9	1e-130	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A4D6LHJ9	0.0	A0A4D6LHJ9_VIGUN; Two-component response regulator ARR-B family
STRING	XP_007132437.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-119	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]