PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0032ss02050.1

Common Name

LR48_Vigan08g135500

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 214aa MW: 24576.4 Da PI: 8.9187

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0032ss02050.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	27.4	9.2e-09	9	40	2	33
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev 33 ppGfrF Pt+eelv +yL++k+e+++++++ v Vang0032ss02050.1 9 PPGFRFFPTEEELVGFYLRNKLEASRNNAAAV 40 8**********************999777544 PP
2	NAM	82.2	1.1e-25	45	118	55	128
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++w+fFs+ ++++a+g r++r+t+sgyWkatg+ v+s++++++g+kk++vfykg+ap g+kt+W m+eyr+ Vang0032ss02050.1 45 DRQWFFFSPGQEREARGGRPSRTTTSGYWKATGSPGYVYSSDNRVIGVKKSMVFYKGKAPMGRKTKWKMNEYRA 118 689*********************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.98E-38	5	137	IPR003441	NAC domain
PROSITE profile	PS51005	28.311	8	139	IPR003441	NAC domain
Pfam	PF02365	2.8E-23	9	117	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MPNIMEDHPP GFRFFPTEEE LVGFYLRNKL EASRNNAAAV TAAIDRQWFF FSPGQEREAR 60 GGRPSRTTTS GYWKATGSPG YVYSSDNRVI GVKKSMVFYK GKAPMGRKTK WKMNEYRAIS 120 NPVTPQLRCE FSLYRVYIVS GSFRAFDRRP SEAEGAESRL HQSSSQVSHL LQLSQLSELS 180 QLPEAGDSSS RNWNEEQLQE PSWELEWEHF NWF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-26	9	119	18	143	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-26	9	119	18	143	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-26	9	119	18	143	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-26	9	119	18	143	NO APICAL MERISTEM PROTEIN
3swm_A	3e-26	9	119	21	146	NAC domain-containing protein 19
3swm_B	3e-26	9	119	21	146	NAC domain-containing protein 19
3swm_C	3e-26	9	119	21	146	NAC domain-containing protein 19
3swm_D	3e-26	9	119	21	146	NAC domain-containing protein 19
3swp_A	3e-26	9	119	21	146	NAC domain-containing protein 19
3swp_B	3e-26	9	119	21	146	NAC domain-containing protein 19
3swp_C	3e-26	9	119	21	146	NAC domain-containing protein 19
3swp_D	3e-26	9	119	21	146	NAC domain-containing protein 19
4dul_A	3e-26	9	119	18	143	NAC domain-containing protein 19
4dul_B	3e-26	9	119	18	143	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0032ss02050.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	1e-146	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017432785.1	1e-140	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	7e-63	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0L9V6B6	1e-139	A0A0L9V6B6_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SC53	1e-139	A0A0S3SC53_PHAAN; Uncharacterized protein
STRING	XP_007132453.1	1e-115	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-59	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]