PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0032ss02410.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

YABBY

Protein Properties

Length: 177aa MW: 19735.8 Da PI: 9.9851

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0032ss02410.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	126.8	3e-39	25	145	5	136
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 ++e+vCyv+CnfCntilavsvP++sl+++vtvrCGhC++llsvn+ + q + ++ ++++++l +ee + k+ +++++ ++ Vang0032ss02410.1 25 MATERVCYVHCNFCNTILAVSVPYNSLLTIVTVRCGHCANLLSVNMGASLQPFPPQDP------QSQKQHLSFEEPSSKELGSSSSKCNKIA 110 689*****************************************999999999885......3455566666666666655555555555 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikee 136 + e ++e pr+pp irP ekr rvPsaynrfi Vang0032ss02410.1 111 PF----EAVEHEQPRIPP-IRPTEKRHRVPSAYNRFINKS 145 54....446678899999.9***************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.5E-42	26	145	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
LPINPPSTHS KDTVTYRLKM SMEMMATERV CYVHCNFCNT ILAVSVPYNS LLTIVTVRCG 60 HCANLLSVNM GASLQPFPPQ DPQSQKQHLS FEEPSSKELG SSSSKCNKIA PFEAVEHEQP 120 RIPPIRPTEK RHRVPSAYNR FINKSFQVSD FAGRKSKGLR LVIQISATGR LSAPQPK

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0032ss02410.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT098144	1e-160	BT098144.1 Soybean clone JCVI-FLGm-16D21 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001344752.1	1e-81	protein YABBY 11 isoform 1
Refseq	XP_027346217.1	1e-81	putative axial regulator YABBY 2
Refseq	XP_027346218.1	1e-81	putative axial regulator YABBY 2
Refseq	XP_028192821.1	1e-81	putative axial regulator YABBY 2
Swissprot	Q9XFB0	9e-41	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A445HP14	3e-80	A0A445HP14_GLYSO; Putative axial regulator YABBY 2 isoform B
STRING	GLYMA12G10210.3	1e-77	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	8e-40	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]