PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0033ss00800.1

Common Name

LR48_Vigan01g121800

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

YABBY

Protein Properties

Length: 290aa MW: 31718 Da PI: 6.692

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0033ss00800.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	203.8	6.8e-63	6	165	2	168
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnveke 89 ++f+ +eq+Cyv+C+fC+til+vsvP +sl++vvtvrCGhCtsllsvn++k+s ql+a+ sh + +++++e+ ++ k+ Vang0033ss00800.1 6 HLFDLPEQICYVECGFCTTILMVSVPCSSLSTVVTVRCGHCTSLLSVNMNKTSfvpfQLRASLSH--------VEPNEGSSEDGAACKTLKN 89 7899********************************************998444444444444........6666666665555555544 PP YABBY 90 esastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 s+s + s+ e+e++p++ v++PPekrqr Psayn+fikeei+r+ka+nP+++hreafs+aaknWa fP+ h Vang0033ss00800.1 90 YSSSVVTY----SDCEEENTPQTSSvVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPKMAHREAFSTAAKNWANFPPSHC 165 44443333....3445555555554499***********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.4E-62	11	165	IPR006780	YABBY protein
SuperFamily	SSF47095	2.62E-9	107	163	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.4E-5	113	163	IPR009071	High mobility group box domain
CDD	cd00084	4.32E-4	121	164	No hit	No description
Gene3D	G3DSA:1.20.140.40	3.8E-6	204	272	IPR006501	Pectinesterase inhibitor domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0043086	Biological Process	negative regulation of catalytic activity
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus
GO:0004857	Molecular Function	enzyme inhibitor activity

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MSTLNHLFDL PEQICYVECG FCTTILMVSV PCSSLSTVVT VRCGHCTSLL SVNMNKTSFV 60 PFQLRASLSH VEPNEGSSED GAACKTLKNY SSSVVTYSDC EEENTPQTSS VVNKPPEKRQ 120 RTPSAYNCFI KEEIKRLKAE NPKMAHREAF STAAKNWANF PPSHCKGEAD SCKILHLDCH 180 VESPNASQVT TLKIFNFSTI SSLLESNITD PELLFKLSLR VAIDELSKLS NFPSKLRANA 240 EHDARLQKAI NVYSSVIGDA LDRLNDSISA LGTVTGRIVS STSVNNVEM*

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0033ss00800.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-171	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017435243.1	1e-139	PREDICTED: axial regulator YABBY 4
Swissprot	Q9LDT3	4e-67	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A0L9TM39	0.0	A0A0L9TM39_PHAAN; Uncharacterized protein
STRING	XP_007153748.1	1e-112	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	2e-69	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]