PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0039ss00690.2

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

FAR1

Protein Properties

Length: 228aa MW: 26202.8 Da PI: 6.5107

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0039ss00690.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.6	1.8e-27	91	179	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ + ++s+r+g+i r++ C+keg+ + + k ++ r++ra+tr gCka++++k ek+gkw++tk++++HnH+l+ Vang0039ss00690.2 91 FYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFSSVRKPRASTREGCKAMIHIKYEKSGKWVITKFVKDHNHPLV 179 9************************************999999989*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-25	91	179	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
LNLDRVYSVL LCNMESQLVD RNDAMEVSGN MDLITYEVQV DQETYEVDPN EGCRVLETSS 60 GGELGICDDD HAIQEPYEGM EFESEDAAKI FYDEYARRVG FVMRVMSCRR SERDGRILAR 120 RLGCNKEGYC VSIRGKFSSV RKPRASTREG CKAMIHIKYE KSGKWVITKF VKDHNHPLVV 180 SPREARQTMD EKDKKIQELT AELRHKKRLC ATYQEQLTSF MKVAVDH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0039ss00690.2

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017423231.1	1e-158	PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
Refseq	XP_017423232.1	1e-158	PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
Refseq	XP_017423233.1	1e-158	PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
TrEMBL	A0A0S3SJM8	1e-156	A0A0S3SJM8_PHAAN; Uncharacterized protein
STRING	XP_007148636.1	1e-152	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	4e-95	FAR1 family protein