PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0041ss00690.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 189aa    MW: 21508.6 Da    PI: 10.2113
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0041ss00690.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.28.6e-135896244
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAak 44
                       +y+GVr+ + +g+++AeIrdp+++g   r++lg+f+   +A+ 
  Vang0041ss00690.1 58 HYRGVRQQP-WGKFAAEIRDPNKRG--SRVWLGTFDI-AKAYN 96
                       8********.**********96655..**********.66654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.5E-2457113IPR001471AP2/ERF domain
CDDcd000183.19E-2457112No hitNo description
PROSITE profilePS5103217.02958112IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-1558114IPR016177DNA-binding domain
PfamPF008471.2E-75895IPR001471AP2/ERF domain
SMARTSM003802.9E-2658118IPR001471AP2/ERF domain
PRINTSPR003676.8E-105970IPR001471AP2/ERF domain
PRINTSPR003676.8E-1094114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
LLHKKPQLNR KPSLQISLPR RSSGSNLGNP KKIEWIQFGK QVPNPPVVLL ENQSENKHYR  60
GVRQQPWGKF AAEIRDPNKR GSRVWLGTFD IAKAYNRVAF RLCGSKAILN FPLEASAVEE  120
VAEAEGEKKQ RREEEEVEEV KLVVKKEKKK QEVNCFREFS EVPKVANFQS YVKELASLLS  180
GADGHHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2654119170ATERF1
3gcc_A1e-2654119170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0041ss00690.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017422112.14e-62PREDICTED: ethylene-responsive transcription factor 5
SwissprotO803411e-40EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A0L9TQV88e-61A0A0L9TQV8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R5G28e-61A0A0S3R5G2_PHAAN; Uncharacterized protein
STRINGGLYMA17G15460.16e-49(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-37ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]