PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0045ss00820.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NF-YA

Protein Properties

Length: 230aa MW: 25839.7 Da PI: 8.8417

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0045ss00820.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.1	5.1e-32	134	190	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k +++rkpylheSRh hAlrRpRg+gGrF Vang0045ss00820.1 134 EEPVFVNAKQYHGILRRRQSRAKAESENKA-IRNRKPYLHESRHMHALRRPRGCGGRF 190 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	8.2E-36	132	193	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.942	133	193	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.6E-27	135	190	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.9E-24	136	158	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	138	158	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	4.9E-24	167	190	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
LSVFVLPLWY IQYVWIVLRP TRNMTSAHNL TDNEDEGQHQ SESQVQSPST NGISDSAIRT 60 QNVNVQYATP GQLGAGHAMV PPVYPYPDPY YRSIFAPYDT QPYPPQAYGG QPMVHLQLMG 120 IQQAGVPLPT DAVEEPVFVN AKQYHGILRR RQSRAKAESE NKAIRNRKPY LHESRHMHAL 180 RRPRGCGGRF LNSKKEENEH NDVASADKSQ SNINLNSDKN DQTSSDRTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	9e-21	133	200	1	68	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0045ss00820.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT089415	0.0	BT089415.1 Soybean clone JCVI-FLGm-1L22 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017410213.1	1e-153	PREDICTED: nuclear transcription factor Y subunit A-7-like
Swissprot	Q84JP1	2e-70	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A0S3QYY6	1e-151	A0A0S3QYY6_PHAAN; Uncharacterized protein
STRING	XP_007159545.1	1e-135	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5379	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	1e-59	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]