PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0045ss01380.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CAMTA
Protein Properties Length: 1133aa    MW: 128111 Da    PI: 5.6638
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0045ss01380.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1179.25.1e-56481642118
               CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                        ++ ++rwl++ ei+aiL n++k++++ e++t p+sgsl+L++rk++ryfrkDG++w+kkkdgktvrE+he+LK g+v+vl+cyYah+ee+++
  Vang0045ss01380.1  48 VEAQHRWLRPAEICAILSNYKKFRIAPEPATMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEEDES 139
                        5679**************************************************************************************** PP

               CG-1  94 fqrrcywlLeeelekivlvhylevk 118
                        fqrr+ywlLeee+++ivlvhy++vk
  Vang0045ss01380.1 140 FQRRTYWLLEEEHSNIVLVHYRQVK 164
                        **********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.83543169IPR005559CG-1 DNA-binding domain
SMARTSM010768.2E-7546164IPR005559CG-1 DNA-binding domain
PfamPF038592.2E-4849162IPR005559CG-1 DNA-binding domain
SuperFamilySSF812964.9E-15549634IPR014756Immunoglobulin E-set
PfamPF018334.8E-5549625IPR002909IPT domain
SuperFamilySSF484032.18E-19729845IPR020683Ankyrin repeat-containing domain
CDDcd002045.36E-16731843No hitNo description
Gene3DG3DSA:1.25.40.204.2E-19731847IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.863734855IPR020683Ankyrin repeat-containing domain
PfamPF127963.6E-9756851IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.965784816IPR002110Ankyrin repeat
SMARTSM002480.002784813IPR002110Ankyrin repeat
SMARTSM00248390823852IPR002110Ankyrin repeat
SuperFamilySSF525401.38E-79511006IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.32956978IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407958986IPR000048IQ motif, EF-hand binding site
PfamPF006120.0046958977IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0389791001IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.629801004IPR000048IQ motif, EF-hand binding site
PfamPF006120.001982999IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1133 aa     Download sequence    Send to blast
MAEARQYFPP SQLGQLFFSL IPLLLLEIPI IQTLKKETLF RNIKQIIVEA QHRWLRPAEI  60
CAILSNYKKF RIAPEPATMP PSGSLFLFDR KVLRYFRKDG HNWRKKKDGK TVREAHERLK  120
AGSVDVLHCY YAHGEEDESF QRRTYWLLEE EHSNIVLVHY RQVKGTKANY TCAKENEESL  180
PCAEQTDKIM LKAEMDTSFS SALHPNSYQV PSQTMDSSMN SAQVSEYEEA ESAFNSHASS  240
EFYSFLELQR PVEKIIDQPA DSYSPHPLIN EQKKLPVIAD MNYISLTQDR KFIDIHNGGL  300
IYESPKPLGF SSWEDILENN GESQHMPFQP LFPEMQPDEM AVNSSFCQGY DIMVPHLTTS  360
IAKLHDNGSL IQAEGSWQGY SVDSLRVSSW PIDNVHSSST CEVSCSNCEH EVNEVDIQKS  420
LQQSLLHQHK QNKVLMQNDP QEIMLDYLKS DFEASRTLDG IEDPRFTFKR TLLDGSPAEE  480
GLKKLDSFNQ WMSKELGDVE ESNKPSTSGA YWDTVESESE VGSTTIPSQG HLDTYVLDPS  540
VSNEQLFSII DYSPSWAFEG SEVKIIISGR FLRSQQEAEQ CKWSCMFGEV EVPAVILAKD  600
VLCCHTPLHK AGRVPFYVTC SNRLACSEVR EFDFQVNCTQ EVNTAGEDRA IVFHTLSRRF  660
GELLSLGHAV PQNSDSISEN EKSELRSKIS SLLRGEDDVW DKLLELTQEK DISPEDLQEQ  720
LLQNLLKDKL HAWLLQKITD DGKGPNVLDE GGQGVLHFAA ALGYDWALEP TLVAGVNVNF  780
RDINGWTALH WAAFYGRERT VAFLISLGAA PGLLTDPCPE HPSGRTPADL ASTNGHKGIA  840
GYLAESSLSA QLTTLDLNKD VGENSGNKVV QRIQDIAPVN DLDVLSYEQS LKDSLAAVCN  900
ATQAAARIHQ VFRMQSFQRK QLKEFGDDKF GISDERALSL VKKNGKSHKS GSRDEPVHAA  960
AIRIQNKFRG WKGRKDFLMI RQRIVKIQAH VRGHQVRKNC GKIIWSVGIL EKVILRWRRK  1020
GSGLRGFKSE ANSEVTMIED VTSSEDHYDV LKEGRKQTEQ RLQKALARVK SMIQYPEARD  1080
QYHRVLNVVT QIQDNQVKHD SSCNNSEEIR DFNNLTDLEA LLDEDIFMPT AT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ydw_A1e-1168384312165DARPIN 44C12V5
4ydw_B1e-1168384312165DARPIN 44C12V5
4ydy_A1e-1168384312165DARPIN 44C12V5
4ydy_B1e-1168384312165DARPIN 44C12V5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0045ss01380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017442435.10.0PREDICTED: calmodulin-binding transcription activator 3
TrEMBLA0A0S3QYK90.0A0A0S3QYK9_PHAAN; Uncharacterized protein
STRINGXP_007159660.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82842735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains