PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0051s00560.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YA
Protein Properties Length: 194aa    MW: 21775.7 Da    PI: 10.113
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0051s00560.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1032.8e-322985158
         CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                      +ep++VNaKQy++Il+RRq R kle+++kl +k+rkpylheSRh hAl+R+RgsgGrF
  Vang0051s00560.1 29 EEPIFVNAKQYHAILRRRQYRTKLESQNKL-IKERKPYLHESRHLHALKRARGSGGRF 85
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-362788IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.9272888IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.0E-263085IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.4E-233153IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.4E-236285IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MLSKYGQIHP AQLIGMPTAR IPLPLDLSEE PIFVNAKQYH AILRRRQYRT KLESQNKLIK  60
ERKPYLHESR HLHALKRARG SGGRFLNTKK HEECKPTSQN HDIDVSRCTH LNLRGNMSES  120
KARQLNYRDG ASTATCSDIS SASNSGDLFQ QHQPDIRLCG YPSHIGRNMQ GYSADIIGSG  180
GAKYCVRHCN SPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-222990263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0051s00560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417946.11e-143PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
SwissprotQ93ZH21e-46NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A0S3RVA71e-142A0A0S3RVA7_PHAAN; Uncharacterized protein
STRINGXP_007135485.14e-93(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.14e-49nuclear factor Y, subunit A3