PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0057s00340.1

Common Name

LR48_Vigan284s002600

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 211aa MW: 23716.7 Da PI: 10.881

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0057s00340.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.5	1.8e-11	47	93	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRR riN +e+Lr++lP++ K +Ka++L ++++ +k+L Vang0057s00340.1 47 KKHSEAEKRRRMRINGQYETLRTILPNL-----IKKDKASVLAETIKQVKEL 93 68*************************9.....5889999999999888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.386	44	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.4E-9	47	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.39E-8	47	98	No hit	No description
SuperFamily	SSF47459	2.36E-12	47	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-13	48	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.1E-9	50	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00528	137	185	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MQHLRSYYNS EAQMIRGGFP QPFISRTYQT SFLKQRSKTE IKVVAAKKHS EAEKRRRMRI 60 NGQYETLRTI LPNLIKKDKA SVLAETIKQV KELKKKVSKV EQESCGSSSK DVVKFPSGAD 120 RLRLEKCNNE EDLVKATLSC EDSMGLMSAI SRAMGSVKTK VVKAEIVSVG GRNRSVLWVQ 180 GLGNDHMGML KSSLKIAMHK PAFKMRRSTH *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0057s00340.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017406625.1	1e-155	PREDICTED: transcription factor bHLH131-like
Swissprot	P0CB25	4e-48	BH131_ARATH; Transcription factor bHLH131
TrEMBL	A0A0L9T7H0	1e-153	A0A0L9T7H0_PHAAN; Uncharacterized protein
STRING	XP_007158377.1	1e-133	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12611	30	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38070.1	4e-42	bHLH family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]