PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0057s00450.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 120aa    MW: 13584.1 Da    PI: 9.9026
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0057s00450.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.32.1e-07285790
              FAR1  7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                      A+++ F v++ +s       g+ t   ++C + gk ++ k +     +   + +++C  +lk k  +  +kw+++ +  +HnH+la
  Vang0057s00450.1  2 AYDLRFVVVILRSDIAtGVRGRKTFVILRCERGGKYRKYKVD--VVPNVYDTRKCECPFRLKGKSCSdGDKWVLKVMCGHHNHKLA 85
                      67778888887776553455666777788******9998877..44445555566666666666666899**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-4785IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MAYDLRFVVV ILRSDIATGV RGRKTFVILR CERGGKYRKY KVDVVPNVYD TRKCECPFRL  60
KGKSCSDGDK WVLKVMCGHH NHKLAETLLG HPYAGRLNMS EQSLLVDMTK IKCSCMVLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0057s00450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416844.15e-84PREDICTED: uncharacterized protein LOC108327672
TrEMBLA0A0S3S7D42e-63A0A0S3S7D4_PHAAN; Uncharacterized protein (Fragment)
STRINGGLYMA09G34850.16e-33(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1801122