PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0057ss01570.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 189aa    MW: 21409.4 Da    PI: 7.9411
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0057ss01570.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.79.7e-31959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krienk+nrqvtf+kRrng+lKKA+ELSvLCdae a+iifs++gklye++s
  Vang0057ss01570.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSTRGKLYEFCS 59
                       79***********************************************96 PP
2K-box15.76.1e-079112170100
              K-box  70 nellleqieelqkkekelqeenkaLrkklee 100
                        ++++l+q++++q+ke+ l e+n+aLr++lee
  Vang0057ss01570.1  91 TQFMLDQLSDSQRKEHLLGEANTALRQRLEE 121
                        799************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.3E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.983161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.14E-32275IPR002100Transcription factor, MADS-box
CDDcd002652.28E-46276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-32323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-323859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AELALIIFST RGKLYEFCST  60
SSMLKTLERY QKCNYGAPEA NASTKEALVL TQFMLDQLSD SQRKEHLLGE ANTALRQRLE  120
EYQINQFQLN PSGEEMGYDR HPGQQHQGDA LFQPLECEPT LQMGYRPDPV SVITGGQSMN  180
NFMGGWLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-21188188MEF2C
5f28_B7e-21188188MEF2C
5f28_C7e-21188188MEF2C
5f28_D7e-21188188MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0057ss01570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ8784241e-108AJ878424.1 Glycine max mRNA for MADS transcription factor (mads28 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017405492.11e-126PREDICTED: MADS-box transcription factor 1-like isoform X2
SwissprotQ8LLR01e-85MADS4_VITVI; Agamous-like MADS-box protein MADS4
TrEMBLA0A0S3S1D91e-122A0A0S3S1D9_PHAAN; Uncharacterized protein
STRINGXP_007163779.11e-117(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.33e-65MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]