PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0057ss01710.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CAMTA
Protein Properties Length: 1092aa    MW: 124369 Da    PI: 7.3718
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0057ss01710.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1164.22.2e-51171323117
               CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                        +e kkrwlk+ e++ iL n++  elt++++++p  gsl L+nr+++ryfrkDG++w+kkkdg+tv E+he+LKvg+ e+l+cyYah+een++
  Vang0057ss01710.2  17 QEaKKRWLKPVEVLYILRNHDMCELTHQPPHQPAGGSLYLFNRRVTRYFRKDGHNWRKKKDGRTVGEAHERLKVGNEEILNCYYAHGEENRS 108
                        5669**************************************************************************************** PP

               CG-1  94 fqrrcywlLeeelekivlvhylev 117
                        fqrr+yw+Le ++e+ivlvhy e+
  Vang0057ss01710.2 109 FQRRSYWMLEPKYEHIVLVHYSET 132
                        *********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143773.41712138IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-6515133IPR005559CG-1 DNA-binding domain
PfamPF038593.8E-4618131IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.3E-4320410IPR013783Immunoglobulin-like fold
SuperFamilySSF812963.89E-11339407IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.203.6E-15514610IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.379516608IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.26E-15520612IPR020683Ankyrin repeat-containing domain
PfamPF127966.5E-8534609IPR020683Ankyrin repeat-containing domain
CDDcd002043.12E-12536608No hitNo description
SMARTSM002480.0019549578IPR002110Ankyrin repeat
PROSITE profilePS5008811.14549581IPR002110Ankyrin repeat
SMARTSM002482400588617IPR002110Ankyrin repeat
SMARTSM000156.7665687IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525404.25E-8666717IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.675666695IPR000048IQ motif, EF-hand binding site
PfamPF006120.028669686IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0032688710IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.999689713IPR000048IQ motif, EF-hand binding site
PfamPF006122.4E-4691710IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1092 aa     Download sequence    Send to blast
LITMSPGLEY NIVDLFQEAK KRWLKPVEVL YILRNHDMCE LTHQPPHQPA GGSLYLFNRR  60
VTRYFRKDGH NWRKKKDGRT VGEAHERLKV GNEEILNCYY AHGEENRSFQ RRSYWMLEPK  120
YEHIVLVHYS ETSKVEFGIT VCNHILQGKS NSQLSSGSSL AFSQSQSPYA AHEPGTSSIF  180
VDSYELNHNF SSPPGSLEVT SEAQALRQLE EELNTNEDSF NERVIYKDKS TILSLPNDQG  240
PLRYNGRQVI DVFLLPVQHM PVASSSLTTN MLNHKERKAK SSEISVFSVD NSDTYCHDFP  300
DDYPDGNEKT ICWTEVLQAC KPLPVTNIPD QYGYKAFENV VIIGSFLYHH PDSTWACMFG  360
DVEVPAKIIQ DGVISCETPS NLLGKVKLCI TSGNRVPCSE VIEFEFRNKA TSCTRCNSLE  420
TEDGRSPEDL LLLVRFAEML HSSTKKDDST ESGSHLSTEQ KDGDDLWIDT LLVGSGKSSD  480
TVKWLLEELL KDKLQLWLSN RSYERDEGTD CSLSKKEQGI IHMISGLGFE WALNPILSCG  540
VNINFRDING WTALHWAAKF GREKMVASLV ASGASAEAVT DPSSQNPSGE TAASVAASHG  600
HKGLAGYLSE VHLTSHLSSL TLTASKISEG ASELEAELTV SNVSEENIVA MLSAMSKLSS  660
RSLGDYNLAA LSIQKKYRGW KGRKEFLALR QKVVKIQAIV RGYQARKQYK ILLWAVGILN  720
KVVLRWRRKR VGITSVRQEM DSNEEESDDE DFLNVFRKKK VNGAIQMALK RVLSMVRHED  780
ARHQYRRLLS LYRQAKIDRI ISKLNVTVQV MKHRHQLQKR TLSIWKTMIG ICYGKNYVLR  840
KFYVSLVINF WLSVYYWMCR YINRQILRMN NFDPSTVNKT IRPRLLSFSF TWQQRWMIDN  900
STNNNYLSPV TMEQDRRLQL IDNAIQKLIQ DDHDKNNTNK IRESHHNDDD RYQNALSHLL  960
SVSQWNILKG EEINEEFEDS RSSEPVAPVT EATENDEIMK ELKKVKRQNF VTHCLLSVMI  1020
VLTVVWQVSE VSLILQLKDG LSHPFRSFGN MLKGMVKVPH VKGQDADDDE QLLESSSLPS  1080
MIIPDMSHAG N*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0057ss01710.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017405519.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X5
SwissprotQ9FYG21e-155CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A0L9T4E50.0A0A0L9T4E5_PHAAN; Uncharacterized protein
STRINGXP_007163775.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-131Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]