PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0057ss01710.3
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CAMTA
Protein Properties Length: 1079aa    MW: 122914 Da    PI: 7.4592
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0057ss01710.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1164.22.2e-51171323117
               CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                        +e kkrwlk+ e++ iL n++  elt++++++p  gsl L+nr+++ryfrkDG++w+kkkdg+tv E+he+LKvg+ e+l+cyYah+een++
  Vang0057ss01710.3  17 QEaKKRWLKPVEVLYILRNHDMCELTHQPPHQPAGGSLYLFNRRVTRYFRKDGHNWRKKKDGRTVGEAHERLKVGNEEILNCYYAHGEENRS 108
                        5669**************************************************************************************** PP

               CG-1  94 fqrrcywlLeeelekivlvhylev 117
                        fqrr+yw+Le ++e+ivlvhy e+
  Vang0057ss01710.3 109 FQRRSYWMLEPKYEHIVLVHYSET 132
                        *********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143773.99812138IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-6515133IPR005559CG-1 DNA-binding domain
PfamPF038593.7E-4618131IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.2E-4307397IPR013783Immunoglobulin-like fold
SuperFamilySSF812963.89E-11326394IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.203.6E-15501597IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.379503595IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.26E-15507599IPR020683Ankyrin repeat-containing domain
PfamPF127966.4E-8521596IPR020683Ankyrin repeat-containing domain
CDDcd002042.99E-12523595No hitNo description
PROSITE profilePS5008811.14536568IPR002110Ankyrin repeat
SMARTSM002480.0019536565IPR002110Ankyrin repeat
SMARTSM002482400575604IPR002110Ankyrin repeat
SMARTSM000156.7652674IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.675653682IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525404.25E-8653704IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.027656673IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0032675697IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.999676700IPR000048IQ motif, EF-hand binding site
PfamPF006122.4E-4678697IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1079 aa     Download sequence    Send to blast
LITMSPGLEY NIVDLFQEAK KRWLKPVEVL YILRNHDMCE LTHQPPHQPA GGSLYLFNRR  60
VTRYFRKDGH NWRKKKDGRT VGEAHERLKV GNEEILNCYY AHGEENRSFQ RRSYWMLEPK  120
YEHIVLVHYS ETSKGKSNSQ LSSGSSLAFS QSQSPYAAHE PGTSSIFVDS YELNHNFSSP  180
PGSLEVTSEA QALRQLEEEL NTNEDSFNER VIYKDKSTIL SLPNDQGPLR YNGRQVIDVF  240
LLPVQHMPVA SSSLTTNMLN HKERKAKSSE ISVFSVDNSD TYCHDFPDDY PDGNEKTICW  300
TEVLQACKPL PVTNIPDQYG YKAFENVVII GSFLYHHPDS TWACMFGDVE VPAKIIQDGV  360
ISCETPSNLL GKVKLCITSG NRVPCSEVIE FEFRNKATSC TRCNSLETED GRSPEDLLLL  420
VRFAEMLHSS TKKDDSTESG SHLSTEQKDG DDLWIDTLLV GSGKSSDTVK WLLEELLKDK  480
LQLWLSNRSY ERDEGTDCSL SKKEQGIIHM ISGLGFEWAL NPILSCGVNI NFRDINGWTA  540
LHWAAKFGRE KMVASLVASG ASAEAVTDPS SQNPSGETAA SVAASHGHKG LAGYLSEVHL  600
TSHLSSLTLT ASKISEGASE LEAELTVSNV SEENIVAMLS AMSKLSSRSL GDYNLAALSI  660
QKKYRGWKGR KEFLALRQKV VKIQAIVRGY QARKQYKILL WAVGILNKVV LRWRRKRVGI  720
TSVRQEMDSN EEESDDEDFL NVFRKKKVNG AIQMALKRVL SMVRHEDARH QYRRLLSLYR  780
QAKIDRIISK LNVTVQVMKH RHQLQKRTLS IWKTMIGICY GKNYVLRKFY VSLVINFWLS  840
VYYWMCRYIN RQILRMNNFD PSTVNKTIRP RLLSFSFTWQ QRWMIDNSTN NNYLSPVTME  900
QDRRLQLIDN AIQKLIQDDH DKNNTNKIRE SHHNDDDRYQ NALSHLLSVS QWNILKGEEI  960
NEEFEDSRSS EPVAPVTEAT ENDEIMKELK KVKRQNFVTH CLLSVMIVLT VVWQVSEVSL  1020
ILQLKDGLSH PFRSFGNMLK GMVKVPHVKG QDADDDEQLL ESSSLPSMII PDMSHAGN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0057ss01710.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017405519.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X5
SwissprotQ9FYG21e-155CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A0L9T4E50.0A0A0L9T4E5_PHAAN; Uncharacterized protein
STRINGGLYMA11G36930.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-131Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]