PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0057ss01800.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YC
Protein Properties Length: 178aa    MW: 19775.5 Da    PI: 6.5638
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0057ss01800.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC51.62.2e-1615951897
              NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                       + e+P +r+kki+  d+dvk++s+ea  l+s++ elf+  l+ +s   a e+kr+t++   +  av+r + + dfl+d+ p
  Vang0057ss01800.1 15 ELEFPKSRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAKVAIEKKRKTVNLEHVRMAVKRHQpTRDFLLDDLP 95
                       679***************************************************************9976489*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.79E-201583IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.2E-201581IPR009072Histone-fold
PfamPF008082.1E-191780IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MIAMAEEEEN GVSIELEFPK SRVKKIMTLD KDVKRVSSEA LFLVSRSTEL FLQFLAEKSA  60
KVAIEKKRKT VNLEHVRMAV KRHQPTRDFL LDDLPPPSEP AKPDGPAKPV VRPKLDAAPS  120
GTRRIDQFFR KPEPQNPSQA QSPENPAQAQ SSEIPAQAQA PEIPSQTESP EVPFETQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0057ss01800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017405432.11e-123PREDICTED: dr1-associated corepressor
TrEMBLA0A1S3TL051e-112A0A1S3TL05_VIGRR; uncharacterized protein LOC106756506
STRINGXP_007163752.16e-92(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.13e-48nuclear factor Y, subunit C13