PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0058ss00300.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 206aa    MW: 23442.9 Da    PI: 9.8786
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0058ss00300.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260103.42e-3214100187
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                        aCaaCk++rrkC ++C+lap fp  ++k+f n+hklFG+ ++++++k l++ +r+ a++++++e+++ra+dPv G++++il lq+ l
  Vang0058ss00300.1  14 ACAACKFQRRKCGPNCILAPFFPPYRQKQFLNAHKLFGVGKITSMIKPLDPVNRNSAIDAIIFESDMRAKDPVGGCLRTILYLQSYL 100
                        7*********************************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.56313114IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-3014101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEGGTSSSRS TIQACAACKF QRRKCGPNCI LAPFFPPYRQ KQFLNAHKLF GVGKITSMIK  60
PLDPVNRNSA IDAIIFESDM RAKDPVGGCL RTILYLQSYL SLRGYRRWMT SANIKIPDGC  120
GYDQCVLSWS QESNDMVDAS LAVVWVRNQR GIGVVLNRSR FKSEGEWWVR SWPRSRRNTD  180
QCYEKLLLNL EEGEAVHDTR AAWRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-2415971294LOB family transfactor Ramosa2.1
5ly0_B4e-2415971294LOB family transfactor Ramosa2.1
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0058ss00300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-163AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41333259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-33LOB domain-containing protein 22