PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0058ss00460.1

Common Name

LR48_Vigan05g201000

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 139aa MW: 15414.2 Da PI: 6.1294

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0058ss00460.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.3	2.4e-10	14	43	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 rg W++eEde+l+++++ +G g+W+++++ Vang0058ss00460.1 14 RGLWSPEEDEKLINYITTYGHGCWSSVPKL 43 789************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-14	6	43	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.61E-9	9	44	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.036	9	62	IPR017930	Myb domain
Pfam	PF00249	8.2E-8	14	44	IPR001005	SANT/Myb domain
CDD	cd00167	1.30E-6	17	42	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIT TYGHGCWSSV PKLAESTWSS LGCVPIHLNP 60 NQQSQTITTK SDTTPHLILE KFINPSTWQN QAVEPTIDLV PKVCESIEDY VCSIPFSSSA 120 NSQHQHEDAV ACYTPEGK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0058ss00460.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	1e-152	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017424677.1	4e-57	PREDICTED: transcription factor MYB26-like
TrEMBL	A0A0L9UNC8	9e-56	A0A0L9UNC8_PHAAN; Uncharacterized protein
STRING	GLYMA13G42431.1	3e-37	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17500	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	2e-25	myb domain protein 26

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]