PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0058ss00540.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YA
Protein Properties Length: 243aa    MW: 27419.6 Da    PI: 10.2919
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0058ss00540.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.82.3e-30121177158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        +ep+YVN+KQy++Il+RR  Rakle ++k  +k rkpylheSRh hA++R+Rg gGrF
  Vang0058ss00540.1 121 EEPIYVNSKQYHAILRRRLYRAKLEVQNKP-IKDRKPYLHESRHLHAVNRARGAGGRF 177
                        69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.2E-33119180IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.954120180IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-25122177IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.2E-22123145IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860125145IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.2E-22154177IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVSWAGQKTM NCSSWGTSES RSLSLKVDFL PQQCHRSKTL SFQFQEQDSS SIHSGQSSTR  60
LGSAQSGEMS VQHSSTGSTP QHRSFMQNHD FTFPPPLLDH SQTLPVEATP IRIPLQLDIK  120
EEPIYVNSKQ YHAILRRRLY RAKLEVQNKP IKDRKPYLHE SRHLHAVNRA RGAGGRFLNT  180
KKLQQSTRTL GNTAESNMHK IENYRDGDNA TYASNTAARN MQNYTSDKGG GTTHQQPLFV  240
YM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-19121181262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0058ss00540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-145AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017424849.11e-163PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
RefseqXP_017424850.11e-163PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
TrEMBLA0A0S3SFW11e-161A0A0S3SFW1_PHAAN; Uncharacterized protein
STRINGXP_007150480.11e-125(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.11e-36nuclear factor Y, subunit A5