PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0058ss00620.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Nin-like

Protein Properties

Length: 979aa MW: 107859 Da PI: 5.9215

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0058ss00620.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.6	2.8e-29	607	657	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Vang0058ss00620.1 607 EKNVSLSVLQQYFSGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKINKV 657 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.62	591	677	IPR003035	RWP-RK domain
Pfam	PF02042	4.5E-26	609	657	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.86E-20	873	962	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.4E-21	875	957	No hit	No description
PROSITE profile	PS51745	18.698	878	960	IPR000270	PB1 domain
SMART	SM00666	7.2E-19	878	960	IPR000270	PB1 domain
CDD	cd06407	5.03E-32	879	959	No hit	No description
Pfam	PF00564	1.1E-14	881	959	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 979 aa Download sequence Send to blast
LISNPSMEYP FSSKEREIGD WQSSGTQLVG STSLDSRMNN SISEDMPNSF SELMNFDTYA 60 GLCNSPSISD QILANELPSF ASLPYSLPDG FNLVQQNNGQ CYMSGVGRND NDMESSPIYG 120 EKVVCQQVDT LLGFLNDSNE ANNLNSKLKI NGSSQHLNNS EAGNYIMSRP PALSLDERML 180 RALSFFKESA GGGILAQVWV PIKNGDQFIL STSEQPYLLD QMLAGYREVS RTFTFSAEGK 240 SGCFLGLPGR VFTSKVHEWT SNVGYYSMNE YLRFEHAINH HVRGSIAFPI FDVHSELLCC 300 AVLEIVTTKE KPDFNREIEI VCRALQLVNL STAKPLRCLP QCLSNNKKAT LTEIVDVLRS 360 VCHAHRLPLA LTWLPCCYTE GSRGEVTRIR TKGCHSTISG KNILCLEESA CYITDRALAG 420 FVRACTEHHI EEGKGIAGKA LRSNHPFFCP DVKEYDISEY PLVHHARKYN LNAVVAIRLR 480 STYTNHDDYI LEFFLPVNMR GGLEQQLLLD NLSGTMQRIC SSLRTVSDAE LSRIESSPEG 540 FEKTNAPYFP PLSCQNSGVP LINGEYHSVP MMSSTPTKAG GNEIEPSANQ GRYGAKRQVQ 600 KNKSTSEKNV SLSVLQQYFS GSLKDAAKNI GVCPTTLKRI CRQHGISRWP SRKINKVNRS 660 LKKIQTVLDS VRGVEGGLKF DSSMGAFVAR GSIIQETDAH KSLLFPEKNI IKDPAHITQE 720 AVPVPRAPCN EVEEELKKTN AFSVGCCEDS KSMAIDDGSC EMESLCTKVQ DCPEQACLGS 780 VLPEEQDKWT GNKSGLRVEN CKCSILGQSS NSLIGKEMDI GVDGDAEVVE PNHPSSSSLT 840 DSSNDSGSMM HSISSGSKSF KNQNQSKVKS TIVDSGSKLI VKAIYREDTI RFKFDPSAGC 900 FRLYEEVAAR FKLQTGSFQL KYLDDEEEWV MLVNDADLQE CLDVLDDIGT CSVRFLVRDL 960 PSILSSSGSS NSYLGGSS*

Sequence ? help Back to Top

Protein Sequence Length: 979 aa Download sequence Send to blast

LISNPSMEYP FSSKEREIGD WQSSGTQLVG STSLDSRMNN SISEDMPNSF SELMNFDTYA  60
GLCNSPSISD QILANELPSF ASLPYSLPDG FNLVQQNNGQ CYMSGVGRND NDMESSPIYG  120
EKVVCQQVDT LLGFLNDSNE ANNLNSKLKI NGSSQHLNNS EAGNYIMSRP PALSLDERML  180
RALSFFKESA GGGILAQVWV PIKNGDQFIL STSEQPYLLD QMLAGYREVS RTFTFSAEGK  240
SGCFLGLPGR VFTSKVHEWT SNVGYYSMNE YLRFEHAINH HVRGSIAFPI FDVHSELLCC  300
AVLEIVTTKE KPDFNREIEI VCRALQLVNL STAKPLRCLP QCLSNNKKAT LTEIVDVLRS  360
VCHAHRLPLA LTWLPCCYTE GSRGEVTRIR TKGCHSTISG KNILCLEESA CYITDRALAG  420
FVRACTEHHI EEGKGIAGKA LRSNHPFFCP DVKEYDISEY PLVHHARKYN LNAVVAIRLR  480
STYTNHDDYI LEFFLPVNMR GGLEQQLLLD NLSGTMQRIC SSLRTVSDAE LSRIESSPEG  540
FEKTNAPYFP PLSCQNSGVP LINGEYHSVP MMSSTPTKAG GNEIEPSANQ GRYGAKRQVQ  600
KNKSTSEKNV SLSVLQQYFS GSLKDAAKNI GVCPTTLKRI CRQHGISRWP SRKINKVNRS  660
LKKIQTVLDS VRGVEGGLKF DSSMGAFVAR GSIIQETDAH KSLLFPEKNI IKDPAHITQE  720
AVPVPRAPCN EVEEELKKTN AFSVGCCEDS KSMAIDDGSC EMESLCTKVQ DCPEQACLGS  780
VLPEEQDKWT GNKSGLRVEN CKCSILGQSS NSLIGKEMDI GVDGDAEVVE PNHPSSSSLT  840
DSSNDSGSMM HSISSGSKSF KNQNQSKVKS TIVDSGSKLI VKAIYREDTI RFKFDPSAGC  900
FRLYEEVAAR FKLQTGSFQL KYLDDEEEWV MLVNDADLQE CLDVLDDIGT CSVRFLVRDL  960
PSILSSSGSS NSYLGGSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0058ss00620.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017425168.1	0.0	PREDICTED: protein NLP8-like
Refseq	XP_017425169.1	0.0	PREDICTED: protein NLP8-like
Refseq	XP_017425170.1	0.0	PREDICTED: protein NLP8-like
Refseq	XP_017425171.1	0.0	PREDICTED: protein NLP8-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A0S3SFW9	0.0	A0A0S3SFW9_PHAAN; Uncharacterized protein
STRING	XP_007150469.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]