PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0058ss00870.1

Common Name

LR48_Vigan05g205300

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

FAR1

Protein Properties

Length: 269aa MW: 30960.9 Da PI: 6.0264

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0058ss00870.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.6	7.6e-27	91	181	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+r+++ +++++ + + tr gC+a++++ +++ gkw+vtk+++eHnH+l+ Vang0058ss00870.1 91 EFYIAYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVHRKDR-VlpPPPATREGCQAMIRLALRDGGKWVVTKFVKEHNHKLM 181 6****************************************99883333.2448899*****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.2E-24	91	181	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
LILSRLVLVL DSEAMDHESG QGFDSDDSDL EMQAEISEKH QKIDEFSKDL ELCGSEDEKF 60 VEPPATEIPT DIEAVEPFIG MEFNSREEAR EFYIAYGRRI GFTVRIHHNR RSRVNNQVIG 120 QDFVCSKEGF RAKKYVHRKD RVLPPPPATR EGCQAMIRLA LRDGGKWVVT KFVKEHNHKL 180 MSPSKVPWRG SGKHLVSEDE KDRRIRELSL ELYNERQKCK RRCAAYEEQL NIILNDLEKH 240 TEHISEKVAA VVRSIREIEE EKSDSDGG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0058ss00870.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017425427.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_017425429.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_017425430.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_017425431.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_017425432.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0L9UP09	0.0	A0A0L9UP09_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SG33	0.0	A0A0S3SG33_PHAAN; Uncharacterized protein
STRING	XP_007150429.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8861	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	2e-43	FAR1 family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]