PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0063ss00440.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WOX
Protein Properties Length: 107aa    MW: 12470.5 Da    PI: 9.718
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0063ss00440.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.61.5e-11663557
                       SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  5 ttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       +++tkeql +L +l+    r p++e+  ++A+kl    ++ +  V+ WFqN  ++e++
  Vang0063ss00440.1  6 WKPTKEQLSILVTLYDYgIRSPTKEQVYDIATKLrsygEIRDFSVYCWFQNYGYRERQ 63
                       99**************88*********************************9999986 PP
2Wus_type_Homeobox74.51.6e-24564564
  Wus_type_Homeobox  5 RWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                        W Pt+eQ+ iL +ly+ G+r+P+ke++ +i+++L++yG+i+d  V+ WFQN   Rerq+
  Vang0063ss00440.1  5 CWKPTKEQLSILVTLYDYGIRSPTKEQVYDIATKLRSYGEIRDFSVYCWFQNYGYRERQR 64
                       6*********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000464.7E-9663IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.2E-4665IPR009057Homeodomain-like
SuperFamilySSF466891.98E-7664IPR009057Homeodomain-like
PROSITE profilePS500718.633964IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
LAYKCWKPTK EQLSILVTLY DYGIRSPTKE QVYDIATKLR SYGEIRDFSV YCWFQNYGYR  60
ERQRSLKQGT GATSLPPFIN SKLFLNISLV LLQLFIFNIP NSYLII*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0063ss00440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-180AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017420310.13e-32PREDICTED: WUSCHEL-related homeobox 4-like
TrEMBLA0A0L9UEF26e-31A0A0L9UEF2_PHAAN; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.12e-16WUSCHEL related homeobox 2