PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0064ss00130.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

M-type_MADS

Protein Properties

Length: 54aa MW: 6036.11 Da PI: 11.8891

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0064ss00130.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	75.2	5.1e-24	13	54	2	43
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 ri+n++ rqvtfskRr g+ KKA ELS+LCdaev +i+fsst Vang0064ss00130.1 13 RIDNSTSRQVTFSKRRSGLVKKARELSILCDAEVGLIVFSST 54 8***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.57E-24	4	54	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.5E-27	4	54	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	27.754	4	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-24	6	26	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.7E-23	13	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-24	26	41	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-24	41	54	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 54 aa Download sequence Send to blast
LKNMGRGKIV IRRIDNSTSR QVTFSKRRSG LVKKARELSI LCDAEVGLIV FSST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-16	4	54	1	51	MEF2C
5f28_B	2e-16	4	54	1	51	MEF2C
5f28_C	2e-16	4	54	1	51	MEF2C
5f28_D	2e-16	4	54	1	51	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269\|PubMed:23463009}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0064ss00130.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	3e-85	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027921418.1	5e-28	MADS-box transcription factor ANR1-like isoform X2
Swissprot	Q6Z6W2	8e-27	MAD57_ORYSJ; MADS-box transcription factor 57
TrEMBL	A0A0L9TL56	2e-27	A0A0L9TL56_PHAAN; Uncharacterized protein
STRING	XP_007159176.1	2e-27	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14210.1	4e-29	AGAMOUS-like 44

Publications ? help Back to Top
Guo S, et al. The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14. Nat Commun, 2013. 4: p. 1566 [PMID:23463009] Puig J, et al. Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice. Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70 [PMID:23466806] Yu C, et al. The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice. PLoS ONE, 2014. 9(8): p. e105597 [PMID:25140876] Wang H, et al. A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway. Plant Physiol., 2016. 170(4): p. 2365-77 [PMID:26858364]