PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0064ss00150.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

M-type_MADS

Protein Properties

Length: 62aa MW: 7011.19 Da PI: 10.4659

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0064ss00150.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.6	4.6e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rien++nrqvtf+kRrng++KK ELS+LCdaev vi+fs tgklyeys+ Vang0064ss00150.1 9 QRIENSTNRQVTFCKRRNGLMKKTRELSILCDAEVGVIVFSCTGKLYEYSN 59 59***********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.9E-39	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.104	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.49E-28	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.51E-37	2	60	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-29	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-29	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-29	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 62 aa Download sequence Send to blast
MGRGKIPIQR IENSTNRQVT FCKRRNGLMK KTRELSILCD AEVGVIVFSC TGKLYEYSNT 60 R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-19	1	60	1	60	MEF2C
5f28_B	1e-19	1	60	1	60	MEF2C
5f28_C	1e-19	1	60	1	60	MEF2C
5f28_D	1e-19	1	60	1	60	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor (Probable). Is required, together with TT16/AGL32 for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). {ECO:0000269\|PubMed:22176531, ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0064ss00150.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	2e-99	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017433495.1	2e-37	PREDICTED: MADS-box transcription factor 23-like
Swissprot	Q38836	5e-29	AGL11_ARATH; Agamous-like MADS-box protein AGL11
TrEMBL	A0A1S3URD6	5e-35	A0A1S3URD6_VIGRR; MADS-box transcription factor 23
STRING	GLYMA08G06991.1	3e-35	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.2	2e-31	MIKC_MADS family protein

Publications ? help Back to Top
Ezquer I, et al. The Developmental Regulator SEEDSTICK Controls Structural and Mechanical Properties of the Arabidopsis Seed Coat. Plant Cell, 2016. 28(10): p. 2478-2492 [PMID:27624758]