PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0064ss00450.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 312aa    MW: 34609.4 Da    PI: 5.4476
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0064ss00450.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.97.8e-15191225133
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                        C++Cg ++  Tp +Rrgp g+++LCnaCGl+++ k
  Vang0064ss00450.2 191 CQHCGISEksTPAMRRGPAGPRSLCNACGLMWANK 225
                        *****99999**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.6E-65186IPR010399Tify domain
PROSITE profilePS5132013.2565186IPR010399Tify domain
PfamPF062001.5E-105485IPR010399Tify domain
PfamPF062035.0E-15122163IPR010402CCT domain
PROSITE profilePS5101712.759122164IPR010402CCT domain
SMARTSM004014.2E-10185238IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-10187232No hitNo description
Gene3DG3DSA:3.30.50.101.5E-13189228IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.65E-11190225No hitNo description
PROSITE patternPS003440191218IPR000679Zinc finger, GATA-type
PfamPF003208.4E-13191226IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDTVNNRSQN REEQPPPPGT ALAMVDAFHY SNGSDGGEEA TTPLGHASTA VHARTSELTI  60
SFEGEVYVFP AVTPQKVQAV LLLLGGQETP NTVPTPDFLL QQNSQDIREI NDPSRCSKLS  120
RRIASLVRFR EKRKERCFEK KIRYTCRKEV AQRMHRKNGQ FASLKEDYKS HAENWDSSNA  180
IPGPESTERR CQHCGISEKS TPAMRRGPAG PRSLCNACGL MWANKDTSAD IKPSKAEAEH  240
SCAKQDKEFL IGTAESVTDN LSIQVENHAL SLHEQDTLED LADASGTEFE IPAGFDEQVD  300
IDDSNMRTYW L*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0064ss00450.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-125AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017408631.10.0PREDICTED: GATA transcription factor 19-like
SwissprotQ8GXL78e-61GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A0S3R0260.0A0A0S3R026_PHAAN; Uncharacterized protein
STRINGXP_007159158.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.13e-53ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]