PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0069ss00470.1

Common Name

LR48_Vigan406s006000

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 260aa MW: 28921.2 Da PI: 8.0902

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0069ss00470.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	103	125	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Vang0069ss00470.1 103 FSCNYCQRKFYSSQALGGHQNAH 125 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.5E-6	100	130	No hit	No description
PROSITE profile	PS50157	11.427	103	130	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	105	125	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MDLQRQEPCP SESLNMITFS DTMPCQRSSI DTQRKRNHTE SDDQKHPNDS NPRVLLDLSL 60 SNKDSGDDDE SKPELNLLNC FHTNFSENSS ESSQGNELDP RVFSCNYCQR KFYSSQALGG 120 HQNAHKRERT LARRGYKAGA ADFGHTYSTM PFLPSHGLYN KSLGIQVHAM INKPSHQAPI 180 FGLCRSNGWQ RQPLDSQPAI GNFRVGAESE SSLADSVPKV GKFSTRVVTE GFGGHCFGSF 240 AHLKSKQEKL QKLDLSLKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0069ss00470.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017407462.1	0.0	PREDICTED: zinc finger protein 3-like
TrEMBL	A0A0L9T9G1	0.0	A0A0L9T9G1_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3T114	0.0	A0A0S3T114_PHAAN; Uncharacterized protein
STRING	XP_007135804.1	1e-169	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1439	31	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	2e-38	C2H2 family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]